CI01000340_04277249_04284722


Basic Information

Item Value
gene id CI01000340_04277249_04284722
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4277139 ~ 4285407 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_04277249_04284722.mRNA
AAAGATCCTTGCTAGGTACACATTGCATTTGCTGTGCAATTACTGTGCGTCAAAGAATGGACTGCCAGGCACTTAGTGGAGCTTATCTCTCACCCATTCATTCCTTAAAAAAAAAAAAAAACTCCATAAACAGTGAAAACTTTCCTCCCTTTATAAATCTTTCTTTTCCCCCATGGCAACCCCTACGGCAAGTGCTATTGCTGATAGCAGGGAAATCAAATGAAAAGAGACAAACAAAAACTAATGAGGTAGTAAAATCAAAACAGTTTGTCCCTTGAAAATGACAACAATCAGGATTTTAATGGCATCCTGTCTACAGTTTAATGGCATCCCGTGTGGCCTTTGGTCTCCTTCTGCCAGACTGGGGTCTGAATAAAAATCTCTCTCTCCCTCTTTCTCTCTCTCTAAAAAGGATCCTAGAGGGCAGGGCCTAAAGTTTGAGTGCCCTCTCTCCCCATGTGTACACCTCCTCTACCTCCTGTGCTCAGATGATGAGTGCCTCTTACTGAAGACTGACGGACTGTGAAGAACCTGCCAGCAGAACTGTACAGTATCAGGATCCAAGGTGCTACTTTTGTTCTTCTCATACTCTCCATTCCTCTCTCATTGAGAGGAGGTTCTTGAGGTTCCAGCCAAAATCGAAGGCCGTCGGACCCCGTGAGGGACACGGTAGTCAGAGGTAACCATGACAAACCCTTGCAATGTTGTTCTGGAAATTCTGGGGATGCTGATTGGGATGGGGGGCTGGTTTTGTTCCCTGGCGGCCACCGTCATGCCTCAGTGGCTGTCACTTTCTACTGAACTATTTGCCTTGCAGAGCATGGAACAAGGGCTTTGGGAGTCCTGCGTGTTCAATGAGGTGGTTGGCACGGAGTGCAGCCCTTATGACACTATCCTAGGCCTCGACCCTACTTGGATGTTGGCCCGTATTCTGATGTGCCTGTCGGATGCCACATGTCTTCTCGGACTGCTCCTCGCAATCCCTGCCATGAGTCAGATCAACTGCTGTAAGAGTGAGGAAGGACGACGGACCAAGCGGGGTTTGAAGATCACGGCGGCTGTGTTTTTATGCATAGCTGGATTGTTGGTGCTCACTCCCGTTTCCTACGTCGCTCATGATACTGTTATGAAGTTCTTCGATGAGACCACACCTCACGTGGTGTCACGTTCAGAGTTTGGGGACGCGCTGTTCATCGGCTGGGCTGCAGGATTTCTTGACATTGTGGCATCCGTCCTGTTTTTTGCCTCTTGTTCTGACTCAAGATACAGTGAACCACATCTGGCGTATCACCATCAAAGTTCGGACATCAGAACTGTCGATGGTTCAAGAAAACGCACTGAAATGGAGACTAAGCTGTGTTTAATGAAGGCTCTAACGAGCAGCATGTCCTCTGAGGAATGCCAAACAGTGCCACCTCCTCCTCTCCATCATTACTCTGATTTGACCAGGTTAGGAGGAGATAGGGAGCTCCTTTCCACTGGAATACTGCAAAAGGATGTTTCTTTCACCTCTTCCTCAGAACAATGCACGTCAAATTGCCAATGTCCCTGGGATTCCATCCTGGAAGACAAATTCTCTGGTGTTCTCAAGCCACAATTCTATTGAAACTTAACACATATTCTTGTGTGTACATTTATGAGTGTTTTAGATGGATAAATCATCAAAACTCATAAAGGGACCTCGACGGACTTGTGAACCAACACACAAAAAATAAA

Function

NR:

description
claudin 33b

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_04277249_04284722.mRNA True 1716 mRNA 0.47 3 4277139 4285407

Neighbor

gene id symbol gene type direction distance location
CI01000340_04086574_04090310 NA coding downstream 186829 4086230 ~ 4090310 (-)
CI01000340_03750211_03772917 NA coding downstream 503223 3749935 ~ 3773916 (-)
CI01000340_03713291_03747080 PEX5L, PEX5LA coding downstream 529867 3712753 ~ 3747272 (-)
CI01000340_03670820_03675367 NA coding downstream 601772 3670713 ~ 3675367 (-)
CI01000340_03622734_03659141 TMEM131 coding downstream 617983 3621970 ~ 3659156 (-)
CI01000340_04362537_04371224 LURAP1 coding upstream 76968 4362375 ~ 4371224 (-)
CI01000340_04381260_04383972 TTC4 coding upstream 95677 4381084 ~ 4383972 (-)
CI01000340_04384950_04386594 PARS2 coding upstream 99403 4384810 ~ 4386594 (-)
CI01000340_04403305_04410695 SGIP1A, SGIP1 coding upstream 117749 4403156 ~ 4410695 (-)
CI01000340_04491232_04534682 PDE4B, PDE4BA coding upstream 205201 4490608 ~ 4534682 (-)
G488829 NA non-coding downstream 6652 4270218 ~ 4270487 (-)
G488826 NA non-coding downstream 9267 4267656 ~ 4267872 (-)
G488573 NA non-coding downstream 118617 4125363 ~ 4158522 (-)
G488797 NA non-coding downstream 203684 4073118 ~ 4073455 (-)
G488795 NA non-coding downstream 242760 4034146 ~ 4034379 (-)
G488888 NA non-coding upstream 402607 4688014 ~ 4693632 (-)
G488948 NA non-coding upstream 432173 4717580 ~ 4717841 (-)
G488950 NA non-coding upstream 436434 4721841 ~ 4722055 (-)
G488951 NA non-coding upstream 437441 4722848 ~ 4723114 (-)
G488954 NA non-coding upstream 442279 4727686 ~ 4728165 (-)
G488782 NA other downstream 270691 4005805 ~ 4006448 (-)
G487884 NA other downstream 2374867 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 3485730 786551 ~ 791409 (-)
G485786 NA other downstream 3951423 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 4195044 62780 ~ 82095 (-)
G488862 NA other upstream 221789 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 314813 4598714 ~ 4627447 (-)
CI01000340_05321995_05329778 ATG4C other upstream 1035346 5320753 ~ 5330215 (-)
CI01000340_06095704_06194498 MAST2 other upstream 1897883 6095704 ~ 6194501 (-)
G489511 NA other upstream 2035050 6320457 ~ 6327372 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G60061 NA non-coding NC_048565.1 CM023219.2 54797811 ~ 54798014 (-)
tiger barb (Puntius tetrazona) G45084 LOC107739195,LOC107591162,LOC107659043,LOC107709197,LOC107590677,LOC107692437 non-coding NC_056704.1 CM032073.1 14016435 ~ 14128344 (+)