CI01000340_04399692_04401164


Basic Information

Item Value
gene id CI01000340_04399692_04401164
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4399419 ~ 4401496 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_04399692_04401164.mRNA
CCATAAATTGGGGTCACGTCTCATGAGAAAATCAGATGTTCACTAGACCTGAGAGAGGTTAGCAGAAGATAGAGAAGACCTTAGAGAGACAGAAGGAAACGTAAGGGCAGAACAGGAGGAGCACGGACACTGAAGCCACTATGAGAAGGTTATATTCTCCTGCTGTACTGCTGCCAGTTCTGCTGCTGTGTGCTGTGTGTAGTGTGTCAGACGTGCAGGCTGATGTGGGGACCGTCAAGCTGTGTGGCCGAGAGTTCATCCGTGCCGTCGTCTACACGTGTGGGGGCTCCAGGTGGAGGAGGTTCAGCAGTCCGCAGGATATGGAAGGGTTTTTTAATGGAGATCTAAGCAGCCCTGAGGATCCTAGTGAGAGTCTGGGATCTGACCTGACCAGGCGAGACCTGAATGGTTGTTGTCAGTTTGGCTGCAAGAAAAGTGACCTCACGTTGCTCTGCTGAGGACTGAACTTGCGTTTTCTATTTGTCTCACTATGTTTTCTTCCAAGTTGACTTCAGATGAATATGAACGCTTCTCTATAAAGTGTACAGTCAGTAGGAGTTCATATAACAACTTAATTTGCCAATAGATTATGCTAATTTACATAAAAAGCCTGTCTGTCTTAGATCATTCTGCTACACTTGTGCTTTAAACTGCACCATGAAAAGAGGTTGAATATCAACAATGAAATTGTGTTGAGGTGCAGAGCAGTAATTGTGGCGATTAAGTTGTTTTAATTGTAAATTGTATTTTGTGA
>TU559057
GGGCAGTAAAGCACCTAAATACCTGCTGCCCTTTGTTTTTCGATCAAAGTTGTTTGACTTGAGGGGATCAAGTAAGTGTTGGGTGGGGTTTGGACAGGATGGAACTGTCCAACGTGAGCCGTCCAACATGCCTCCATAAATTGGGGTCACGTCTCATGAGAAAATCAGATGTTCACTAGACCTGAGAGAGGTTAGCAGAAGATAGAGAAGACCTTAGAGAGACAGAAGGAAACGTAAGGGCAGAACAGGAGGAGCACGGACACTGAAGCCACTATGAGAAGGTTATATTCTCCTGCTGTACTGCTGCCAGTTCTGCTGCTGTGTGCTGTGTGTAGTGTGTCAGACGTGCAGGCTGATGTGGGGACCGTCAAGCTGTGTGGCCGAGAGTTCATCCGTGCCGTCGTCTACACGTGTGGGGGCTCCAGGTGGAGGAGGTTCAGCAGTCCGCAGGATATGGAAGGGTTTTTTAATGGAGATCTAAGCAGCCCTGAGGATCCTAGTGAGAGTCTGGGATCTGACCTGACCAGGCGAGACCTGAATGGTTGTTGTCAGTTTGGCTGCAAGAAAAGTGACCTCACGTTGCTCTGCTGAGGACTGAACTTGCGTTTTCTATTTGTCTCACTATGTTTTCTTCCAAGTTGACTTCAGATGAATATGAACGCTTCTCTATAAAGTGTACAGTCAGTAGGAGTTCATATAACAACTTAATTTGCCAATAGATTATGCTAATTTACATAAAAAGCCTGTCTGTCTTAGATCATTCTGCTACACTTGTGCTTTAAACTGCACCATGAAAAGAGGTTGAATATCAACAATGAAATTGTGTTGAGGTGCAGAGCAGTAATTGTGGCGATTAAGTTGTTTTAATTGTAAATTGTATTTTGTGAATAAACATTAATGCAAATGCATCAAAGGTGTTTTTC

Function

NR:

description
relaxin family locus A type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_04399692_04401164.mRNA False 754 mRNA 0.45 2 4399552 4401460
TU559057 True 923 TUCP 0.45 2 4399419 4401496

Neighbor

gene id symbol gene type direction distance location
CI01000340_04387653_04393950 NA coding upstream 5433 4387653 ~ 4394119 (+)
CI01000340_04374493_04379773 TTC22 coding upstream 19067 4374316 ~ 4380485 (+)
CI01000340_04310811_04341754 WWC3 coding upstream 57798 4310811 ~ 4341754 (+)
CI01000340_04273797_04274531 CLDN34, CLDN34A coding upstream 125019 4273597 ~ 4274533 (+)
CI01000340_04249473_04264824 SHROOM2A coding upstream 133545 4249473 ~ 4266007 (+)
CI01000340_04564752_04566790 NA coding downstream 163151 4564611 ~ 4567156 (+)
CI01000340_04660938_04668996 NA coding downstream 258124 4659584 ~ 4669322 (+)
CI01000340_04809014_04832590 JAK1 coding downstream 407554 4809014 ~ 4832590 (+)
CI01000340_05105114_05112407 NA coding downstream 702899 5104359 ~ 5112713 (+)
CI01000340_05165855_05175759 NA coding downstream 763786 5165246 ~ 5176372 (+)
G487260 NA non-coding upstream 2942 4356166 ~ 4396610 (+)
G487258 NA non-coding upstream 45450 4353670 ~ 4354102 (+)
G487257 NA non-coding upstream 46035 4353310 ~ 4353517 (+)
G487256 NA non-coding upstream 47000 4352317 ~ 4352552 (+)
G487255 NA non-coding upstream 48516 4350820 ~ 4351036 (+)
G487280 NA non-coding downstream 26114 4427574 ~ 4429926 (+)
G487282 NA non-coding downstream 30639 4432099 ~ 4432647 (+)
G487289 NA non-coding downstream 39443 4440903 ~ 4491970 (+)
G487322 NA non-coding downstream 101086 4502546 ~ 4503214 (+)
G487323 NA non-coding downstream 102475 4503935 ~ 4504201 (+)
G487133 NA other upstream 417007 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 1467752 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 4086307 312212 ~ 313534 (+)
G485427 NA other upstream 4231918 163286 ~ 167634 (+)
G485373 NA other upstream 4285783 106885 ~ 113769 (+)
G489634 NA other downstream 2292761 6694221 ~ 6700788 (+)
G490645 NA other downstream 4637352 9038812 ~ 9043101 (+)
G490826 NA other downstream 4723724 9125184 ~ 9131397 (+)
G490839 NA other downstream 4833513 9234973 ~ 9237559 (+)

Expression


Co-expression Network