CI01000340_04840574_04911814 (RAVER2)


Basic Information

Item Value
gene id CI01000340_04840574_04911814
gene name RAVER2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4839303 ~ 4914305 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_04840574_04911814.mRNA
ATCCCAACCCACCCTGATGGTGGAAAATCATCCGTGTGCACTGTGCAATGATGGATTCATTAATCCGCGCAATGCAATATATTGAACTGGCAATATTTATCAAGCATTGCAGTCGCGGTTTTTTTTTTAAATAGGCTATATTTTACATTTCCGTGCGCTTTAAACAGCAATGTCCAAAATTGCACAGGACATTTCACGCTAAATAAAATTTTCAATTGTTATTATTAGAATGGTTCTCGTGTCGAAAAAAAACATCCAGAATCAGAGCAATGTACTATCCTCATTCTTAAAGAGTCAAACGCAATGGTCTGTAAATATTGTTGATGTGGGATGTGTAGCTGCTGAAACTGAAAGCGTTCATTCAGGGACATTATAAGGACTCCTGTGATGGAGTCTGCCAGGAGATGGCATTTAGCACACCCACGAAAGACGGCATAAGTCATTCATTCCACACCAGACCCAGTGTATAACGAGTCAAAAGATCTGTCAGGCATGCACGATTTTCTGCAGGCATGCTTTTAGATGTTTCTGGCATATATAATCTCTCCATGCATTTTTTTTTTTTAGCTATAAATGTCATCTTGTCCATACAGTTTATTTAATCTTTCATGCAACAGTTCAATAAACAATGTTAATACTGAATAACTTACATTTTTTAGACATTACAATGTTTACTCCAATGAAAAATAGTTCCAACTGAAAAGGTTTGTGCATCTCAGAGCAACACACAGCAGTGGTGTTTCTTTCCTGAATTGATCTGTATTTTTGAACGAATCGGTTGAGTGAATGATTCAATAATGACAGTCACTTGTCGCTGAATAATCGCCACTACAGAATGTTGGGAGCGTGAAATCAGCGAAGTGATACAAAGACAAGTGAAAAGTTGAATGGCACTCTTGAAATGCCAATTAATTTTTCTTCCAAAATAAGCTACTGTTGCACTGAATATCAGAATAATGTGTGGTCACACATTATTTGGCGAAGTCCAGTTGTTTCAATATAAATCCACACGATCAGGAGTCTTGTGTGTGGGCGAAAAAGTTCCCCATGCAGATTTTGCTCATATTCAAGTTTGTCACATGGATTTGCTGCACTGACCGACAGGAAGCTTCTTGATTTGAGTGACTTCTGTGTTCGCGAAAATGAACTGAAATATCTGAATTTCCCCCACAAAAATTTATGGAACAACGGTACATGTAACTGTACTTTTATACACACTACATAAACAATCGACATTTTTTGCCTGTGAAATTTGGCTGAAATTACAATAGCAAGCTAGCTTTGCAGGCATGAGATCCCACCCTCCCTTCAGAGCGCTCTCCAAAGCCACGCCTCCTCCAAAAGACATGCACATGCACAGCAGAGTCTGCAAAGCATCACGAGACAGCATTAAGTTATCTCATGTCTCAAAGCACATTACATTACAATAATAATGAATGTAAACAACTTACAGAGCTCTTACTTGTACCACCTGACTGCTGCAGATTCATTTCAGCGTTGATAGCGTTGACATAGAAACGCAAAAATCTAAGTCCAAGTTCGGGCCAAATGCAATGATTGGACGAACATTTTTTGGTTCTGAGATTCCACATTAGATATATGTACATGTTTTAATATTTTGACCACTTCTATTATTGATTGCTCTCAGGATGTAAAGAGTTTCAACCTACCTTGAAACTCTCTTCAACCTACCTAAATTGCCTACCTTTAAAGTTGGCACGAAACACAATTTGCAATAGTCTTTTCTTCCGTATTATGACGTATAATCAAATGAAGCAGCTTCTCTAACAAGAAAAACAAATGCAGGGCAGGACTTTTTATCCATCGGGAATTGATCGAATCATTGTCCTTTGCTATTGCTGTGATCTCATTTGATTGACAGGTTGTCCCGCCCTCACAACGAAAAACACGTCATCAGAGAAGAGATGTCCTTGCAAGTGGGAGCGGGGCACATCAGTTTTTTAATGATGTTCACGGATAAATAATTTATAATACATACTGCAGTCCATAAAAATTTTCATAATAACTGTGCTTTTAAATAATTTGCACAAATAAATAAATAAATAAATACTAGATTTACTTAAATATTGCTAATGTTTTTAATATACATTTGTTATAATAACACTACGTATATGATCTGCACACTAGAACTATATTATTTTATTACATCATCCCAGATTGTTAAAGAGTTTTGTTATAGCGTTACTGTTTTATTATTATTTTTTACTTGCTGTCGTACATATGACATTGTTCTTTTCAGAGTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATACTGTCCTGATAATAAGGAAAAAAGAGACTGATATTCAGAATGTTTAGTTTTCCATCGGTGGAGGTCGCCAGCTGTACTGTGTCGGGCTCATCCACACTTACTTTCTAGAGTGCCGTCGATGGGTTTGACTCAAAGCACAGACGCCCACCTATCCGCTCTCTCCGACTCACTTTCCACCGAGCGCTTCAAAATGGCGGCAGCTTCATCCATCCAGCCGCCGAACGTGCACTCGATAAAGCGGGAAAATTCACCTCACCCGGAATCCGACAGCCCCGCGAGCCGACAGGAAGAGGACGCAGCATCCGAGGGGATCACCATCCTAAGAGATCTACCCGAACTTGATCCCGAGGAGATCGAGAAACGGCTGGAGAAAACTCGCAGAGAGCTGAGCAACAGGAGGAAGATCCTTATTAAGAACCTGCCACAGGATACAACTAACCAGGAGGTCCATGAAATTCTGCGAGAGTATGAGCTCAAATACTGTTTTGTGGACCGAAACAAAGGAACAGCCGCTCAGGGCTTGTCACCTCCTGCCAGCACCCCAGCAGAGGCTCTGATGTCAAGGATCAGAGTCCAGCATGCCTGCGGGAGAACTACTCTTGTGCAGATCTATGAATGTTTTGGCCTGTTAGACCTGCAGGATGGCCATGGTATGCAGGGTGGAGGCGGCCTGTCAAGCGGCACTGGGCATCCATTCCGTGATGGAATTCTGAAGGAATGTGTGGTGTTCCGGACAGGCAGCAAAATGACAATGGATGCGGCACAGGATGCCATCCGAACTCTGCACCAGACATCGGTCCGAGGCCGTGACATCACCGTCCAGCTTCAGCCCACGGACTCTCTCCTGTGTGTCACCAACCTGCCCTACACGGTCACTGCCGGCCAGTTTCAGGAGCTGGTGCGTTCCTATGGCAACATTGAGCGCTGTTTCCTGGTGTACAGTGACCTTACGGGCCACTCCAAAGGCTACGGCTTTGTGGAGTACATGAAGAAGGACTCGGCCTCCAGGGCACGGTCAGAACTCTTGGGCAAACCGCTGGGTGACCGTGCACTCATGGTGCAGTGGGCTGACGTCAATCAGCTGACCTCTGCTGACCACCTCCACTCCAAGTGCCTATGCGTGGATCGCCTGCCGCTAGACTTTGAAGACTCGGAGGAGCTAGCTCACATTTTTTCAGAGAGCTACAAACCCGTCTTCTGCCAGGTTTGTGAGATTCAAAAACACTGCCTGGTAATTGTGCTGGGAATCAGAGAGTCTTTAGCATATTTGCAACTGGCTCAGGATGAAGGAAGTCCAGTGCGGGGTTTTGCTGTTGTGGAGTATGAGACGGCGGAGCAGGCTGAAGCCATGCTGCTAGAGATGGACAGACAGCTGATCCAGGGTCAGGAGATACGTCTGTCACTCTGTCCCCCAGGAACCTCTGGACGCAGCACTCTCGCCGCCCTCATCGCTGCTCAGGGTGTGATGTTGAGCAATAAGAAAGGTTTACTGCCTGAACCCAATCTGGCCCAGTTCCTCAACAGTATGACCAATCCTGCTGCTCTCCAGGTCCTTATGAGACCCTACCCCACCGCCAAACGAGGAGGAAAGTTTGGTCGACCTCACAATCTCCCCTTCCTGCGTCCACCGTTGACTGCAGCGTTGCTACAGTTAGGAAAAGCACAGCAGAGTGCCATTCTTGGAAACGGTCTTGTTCTACAGAATCTTCTTCACATGCAGATGGCCCAACAACAGCTTTTACAGATCAAAGACAAGCAAATCACTAATGTCCAGGGTCTTTTAGGTGACCCCTCCCGGCTGCTCCTGCAGAAAGTTCTGGGTCTTCGAACTCCAACACCGGTTTCTCTGGGGAAGGGGTTGTTGGGAGATTCTCCCACAGAGTTGGGCCAAGACTCCTCTCCGGTCACATCCCACGGGGGAAACTCTGGGGCTGGAATGGTGTCACATGTACCTGGACGTTCACATGCGAGTTCCATCACTGAACAGAATGGAGTCACTGCGACATGCCTGGCTCCGGAGAAACAGCCTGCTCCACCAGGAACCACAGGGGGATCTGTAAGCTCCCAAACACAGCTTCAAAACTTTCTCCCTGGGATTAACACACCAAGTCTGGGACATTTGCTGGGGAGCACAACACACAAAGCTCCAGCCAACCACCACAGTTCAAGTGTCCAGACTAGTACTGCTGTCACAAGTCAGTCCAGTTGTCAGACGTCTCTGTTGGGAGACCCTCCTAAAGAAGTGAAGTTGCCTTCCAACCCATATCTAAACCTGGCTAGCGTGCTTCCTGGAGTGGTACTACAAGCACCTTGCAACAGTAAACCTCAGACTGTGCAGGCACACACTGGGACATACAGTGCAGTCCTGCCACCTAACACCCACCCTCCCAGTCAATACAGCGCAGAGACCACTCCTGCAGAATACAGTCACCAATACACTCAGCAATACACACAGGAGGCCATGCAGCAGTGGTATCAACACTACCAAGCACAGACCTACGGCAATACAAGCCAAGAGACGGCTGCAGTTACTGAATGCACAAAAGAGCAACCTCAGGAGGTGGAGTTGGTGAAGACCCCCTTGAGTGCACCTCTGCACACCTCTCTGAATGGCAGTGCTCAGACCCTGCTGCCCACCTACAGTGCCCTTCCCATCATGCCAGGCTTCATCGCACCTACACACACGCACACACACACAGCCAGCCCTGCCACACAGACACCCGCTGTACCCACAGCCAATGACTGGAACAACTACTATTATAGTCAGGCTAGAGGGCAAAAGCGAGAATACCCAACACTGCCTACACAGGAAGTGACATCAGAGGGGCCGTATGTAGGCCAGCACTCACAAGGTCTTGGAGGCCAGTATGCAGACTACTTCAAGAAGAAGAGGATCTAACTCGCATTTGCTCTCACTCCTCGCTGTATGTTGTCGTTGTCATGTCCAGGCCTTAACTTCTAGTCTATAACTGATATTTATGAAAAGATTGTACATTTTATTGTGCAGAAGGAGGTTTATTCCCCTTCTTGAACCTTATGTGGATCTGGGTACTGTTCATATTTCTGTCCAACAGCAGGCAGGACCTCCCAAGATTGTCCCAAATGATGCGTTAAGATAATTAGTATTTTCTGTTCTGCCTTTTTACCTCTCTCGCAGGCGGGGCGCACCATTCCACTCCAGAGAAGGGGTTCCGTGTCCGTGTTTTACTGTACTAACGGTCAAGGGCTGATAAAGATAGAGCTACACTCAGAGAATAACAATTTTCAAAGATTTTTTTCCTGACAGGGTAGGGCATAGCCAATGTATATTGTATATTCTGCAAAATTAGTGTATTTTTTACAGTGTACAGACATTATGAAAATATTATTAATATTACGTCTTGCTTGTCATTGTTTATCTTGACTATCAATCCGCTTTCTTAAGCGTACAGGAAATGCACATACTTGCGCGTTCATATCTTTGACGATTAATCTTTAACGTGTCTCTGTACATACTGCTGTATCTGTAGGAACGATCAGCCATTCTGAATACTGCAGGAGCCTTAAAACACGGCGCTCAGAGAAGACATGGCTAAGGCAATAACCTCTACCGTCTCTGGAGAAACGACTACCGCATACTTTAAGGTGACTTTCCCTCCAGATGTCGGTGGGGTGACCTTCACACAACCTTCAGCTACAATGCTGCCAGTGGTTTGTTTTTAATAACATTAAGAGTAATAATATATTACTATAGCAGTAGTAATAATCTGTTGGAAGGATGTCAAGGGTTCAAGTGCTACGTATAGGATAGAAACCTGGCAAAATGTCCGGATGCAAACACCCACATGGTAATAATCTAGCATAATGCCTTTATATGGATATTAGTCAGCTGTTGTTCTGTGGTTTAATTTCTTTACATCTTTAATGGAGAGAGTCTATTATTTTGGTGATTTTTATGCTGCAAAAATCCTGTTTTTAATCCGTATCAGTCTTTTTTTAAGTTAAAATGTGTTTTTTAAAAAAAGATAAATATAAATGAGGCAAAATAAGTGAGATATTAAGATAATGCATCTTGAAGATGCCATGTTGTCATGTTGTGTGGTATTTTTTTCTAAATTTAGATACCTCAAACAACTGCCACAAATCTCCCAATGGATCAAATGAAGTCTTAAAGTCGCATCAAACATTAAA

Function

symbol description
raver2 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in viral nucleocapsid. Predicted to be active in nucleus. Orthologous to human RAVER2 (ribonucleoprotein, PTB binding 2).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_04840574_04911814.mRNA True 6471 mRNA 0.44 18 4839303 4914305

Neighbor

gene id symbol gene type direction distance location
CI01000340_04787190_04796424 AK4 coding downstream 42879 4786938 ~ 4796424 (-)
CI01000340_04748822_04770480 DNAJC6 coding downstream 68823 4748281 ~ 4770480 (-)
CI01000340_04685622_04711254 NA coding downstream 128049 4685450 ~ 4711254 (-)
CI01000340_04598932_04627160 NA coding downstream 211856 4598714 ~ 4627447 (-)
CI01000340_04586637_04588967 NA coding downstream 249940 4586379 ~ 4596261 (-)
CI01000340_04918923_04993041 CACHD1 coding upstream 4309 4918614 ~ 4993274 (-)
CI01000340_05011408_05036816 ROR1 coding upstream 96978 5011283 ~ 5036816 (-)
CI01000340_05142661_05150544 PGM1, PGM2 coding upstream 228153 5142458 ~ 5150627 (-)
CI01000340_05153622_05164991 EFCAB7 coding upstream 239254 5153559 ~ 5165049 (-)
CI01000340_05177681_05192437 ALG6 coding upstream 263288 5177593 ~ 5192437 (-)
G488849 NA non-coding downstream 38773 4798797 ~ 4800530 (-)
G488876 NA non-coding downstream 40713 4798323 ~ 4798590 (-)
G488954 NA non-coding downstream 111138 4727686 ~ 4728165 (-)
G488951 NA non-coding downstream 116189 4722848 ~ 4723114 (-)
G488950 NA non-coding downstream 117248 4721841 ~ 4722055 (-)
G488965 NA non-coding upstream 80583 4994888 ~ 5003749 (-)
G488971 NA non-coding upstream 94348 5008653 ~ 5008993 (-)
G488853 NA non-coding upstream 175930 5090235 ~ 5132749 (-)
G488878 NA non-coding upstream 237010 5151315 ~ 5152688 (-)
G489030 NA non-coding upstream 357755 5272060 ~ 5272285 (-)
G488862 NA other downstream 243042 4507196 ~ 4518120 (-)
G488782 NA other downstream 832855 4005805 ~ 4006448 (-)
G487884 NA other downstream 2937031 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 4047894 786551 ~ 791409 (-)
CI01000340_05321995_05329778 ATG4C other upstream 406448 5320753 ~ 5330215 (-)
CI01000340_06095704_06194498 MAST2 other upstream 1268985 6095704 ~ 6194501 (-)
G489511 NA other upstream 1406152 6320457 ~ 6327372 (-)
G491712 NA other upstream 3884896 8799201 ~ 8799577 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 5107587 10025656 ~ 10029589 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032931 raver2 coding NC_007117.7 CM002890.2 31430791 ~ 31576397 (-)
bowfin (Amia calva) AMCG00005218 NA coding CM030140.1 CM030140.1 19120164 ~ 19146827 (-)