CI01000340_05153622_05164991 (EFCAB7)


Basic Information

Item Value
gene id CI01000340_05153622_05164991
gene name EFCAB7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 5153559 ~ 5165049 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_05153622_05164991.mRNA
ACTGCTGTTATTACAGTATGCGTTGATATTTCGGTTGCATATTGACAATAATTTCATAATGCAGCGCTCAGAGGAAGAGAGGTTTTATATGACGTGCAGGGCTGCTTATCTCTCTGTGTTCAGATCCAGCCTGGTTAATATGACTTCAAAAGATCAGCTGTGCACCGTTCTTCAGCAAGCAGGTAGAAATCCATCACAGAAAGCTTTAGACAAATATTGGCCCCCAGGAACCAAGAAGCTGAATTTTGATGACTTTTGTGAGATCCTTAAGAAGGAAAAACCAGCAGAACCAGACGAGCTTATGAGAATTTTCAAGAAATTTGATGTAAATTGTGATGGATATATATCACATGAAGAGCTCAGCAGAATCCTTACTTCATCTGGTGAAAAAATGTCACCTAAGGAAGTGGATGAAATCTTTTCCTTAGCAGATGTCAACAAAGATGGAAAGTTAGACTACGCAGAGGATGCTGTCCAGTTTTGCAGGCTTCTTGGATCTACAGTAGAACAGTGTCAGACCGCGGCACTGGAGAAGCTTGAGACTGATGCCAAACTGAAGAGGCAGAACTTTGGCAACCAGTTGGAAAACTCTCCACAGAGCCTAGAGTCCCAACCTGAGCTTCCAGCTGCACAGACACAGTCCAAAACAGAGGTGGAAACAACACAGAGGAAAGACAGTCGCTCCTCATCCAGACCATCATCAGCTCGCAGTCGTCGGTCATCTTTATCCACGGCCATCACCATGGGCACTGGCAGCACTAAGAGTGGCAGACTGGCAGAGCCCAAATCTCTACAGGATTGGCATCATATTCTTATGAGAGGCTGTTTTTATCTGGAGGAAGATGGAACGATTGTTTCTCTCCAGTATCGCTTGCATGTCCCCGAGGCTACCGGTGTCTACCTGACCATACGGCCCCTCAATCTTAGCCCAATTCCTGAGAAGCCTTCCCCGTGGATGTGTGTGGACACAGCTCTCTATGTGGTGACAGGGAACAAGACCAAAGAAGATTCAACTTTGGTTTGCTTTACTGAGTTAAGGGATAAGGAGAGGTTTGTGTGGAGGGGAGAGCTCAATGCGGGCTCATATCTGCTCATGCCCTTCACCACTGGCTGTAGATTGATGAGAAGTACAAAGAAGACCACCACTAAAACTGCTCAGCTAGTCAACCGCACCCAGTCTGGAGAGCTGGAGCTAACCAAAGAGTTCAAGGCGGCATTGTCTGACATCTTTGAAGTGATCGATTTAGATGGCAGCGGCCTGCTGAGCCTAGAGGAGTACAACTTCTTTGAACAGAGAACAAGTGGAGAGAAATGTGATGAGGATGCCTGGGCCATCTGCAAAGGTCTTGAACAAGTAATGTCCAATCCAATAATATGGATTATTTGCTCTCCTATAGAGAACTTTGACACACAGAAAAATGAGTTAACTAGACAAGGATTCCTAGAGCTCAACCTGATGGAAGCGAATGATCGGGAGGGGGACCCCAGGGATTTGTGGCTTACCTTGGAGGCCATGGGTTACAACCGCAGCTTGGAGATGGTGGAGGCCTGTCCATTTGTTATTGAAGTCTACTGTGAGGATGTCAAGGCAACTCTTCAGGCAGTTCATTTGGATTCTGGGATCAAGATGTTGAATTCTGCTGTACAGAGGTCTGTCACATCAAAAGCAGAGGCTAGATCTCTGAAGGGTCATGAGAATGTCTTGGTTTATACATACAAAGGAGAGAGCAGAATTTCATCAGTCATTGCCAACAAGTCCAATCAGAAGGTGACGGTGCACATCAACAATGAACAAAGCAAGAACTGTGTGAGCAGTAGGGGCATGAGTATGTTTGCTGTGGAGGTTCCTGCTAGGACTAAAATGGTGTGTCAGCACGTCATGGCTTCAAATGATCAACTGGAGTGGACTTACAACTGCGTTGAGAGCATCATACCAAGTTTGTAAATGCTGCAGTAACATTAGGAATTTATTATGAGATAACAAATTATGTAGTGCTTGTAAAATAAA

Function

symbol description
efcab7 Predicted to enable calcium ion binding activity. Orthologous to human EFCAB7 (EF-hand calcium binding domain 7).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_05153622_05164991.mRNA True 2008 mRNA 0.45 13 5153559 5165049

Neighbor

gene id symbol gene type direction distance location
CI01000340_05142661_05150544 PGM1, PGM2 coding downstream 2932 5142458 ~ 5150627 (-)
CI01000340_05011408_05036816 ROR1 coding downstream 116743 5011283 ~ 5036816 (-)
CI01000340_04918923_04993041 CACHD1 coding downstream 160285 4918614 ~ 4993274 (-)
CI01000340_04840574_04911814 RAVER2 coding downstream 239254 4839303 ~ 4914305 (-)
CI01000340_04787190_04796424 AK4 coding downstream 357135 4786938 ~ 4796424 (-)
CI01000340_05177681_05192437 ALG6 coding upstream 12544 5177593 ~ 5192437 (-)
CI01000340_05196551_05197666 FOXD3 coding upstream 31079 5196128 ~ 5198285 (-)
CI01000340_05321995_05329778 ATG4C coding upstream 155986 5320753 ~ 5330215 (-)
CI01000340_05387790_05394295 USP1 coding upstream 221940 5386989 ~ 5394445 (-)
CI01000340_05450963_05454017 NA coding upstream 285344 5450393 ~ 5455519 (-)
G488878 NA non-coding downstream 871 5151315 ~ 5152688 (-)
G488853 NA non-coding downstream 20810 5090235 ~ 5132749 (-)
G488971 NA non-coding downstream 144566 5008653 ~ 5008993 (-)
G488965 NA non-coding downstream 149810 4994888 ~ 5003749 (-)
G488849 NA non-coding downstream 353029 4798797 ~ 4800530 (-)
G489030 NA non-coding upstream 107011 5272060 ~ 5272285 (-)
G489032 NA non-coding upstream 117864 5282913 ~ 5283225 (-)
G489083 NA non-coding upstream 283828 5448877 ~ 5449105 (-)
G489108 NA non-coding upstream 353133 5518182 ~ 5519118 (-)
G489159 NA non-coding upstream 501469 5666518 ~ 5666834 (-)
CI01000340_04598932_04627160 NA other downstream 494498 4598714 ~ 4627447 (-)
G488862 NA other downstream 557298 4507196 ~ 4518120 (-)
G488782 NA other downstream 1147111 4005805 ~ 4006448 (-)
G487884 NA other downstream 3251287 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 4362150 786551 ~ 791409 (-)
CI01000340_06095704_06194498 MAST2 other upstream 1018241 6095704 ~ 6194501 (-)
G489511 NA other upstream 1155408 6320457 ~ 6327372 (-)
G491712 NA other upstream 3634152 8799201 ~ 8799577 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 4856843 10025656 ~ 10029589 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location