CI01000340_07701724_07717637 (CHD1L)


Basic Information

Item Value
gene id CI01000340_07701724_07717637
gene name CHD1L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7701386 ~ 7717852 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_07701724_07717637.mRNA
ATATAAAATGACCTGTCGGGATTTGTGAATTTCAGATCTGCATTACACATACGTGACCTTGTTTGGTATTGTAGGCAAACATTTTTTTTTACTTTATATTTAGTTTTTATTGATGTATTTCTCTTTTTAACAATGGCGCCTTGTGGACCATACGTAATTACATTGCCGACTACTCATTGGACGACGTCTGTCTTGGTACCCGCCCACTTACTGTTGCAGGAAGTAGTCATGTCGAAGTTCACGTCAAACTCCTCTGGCGCGCGCAACCTGTTATAACTTTAATATTCGACTGAATAAAGTGTCGAAATTTAGAGGGCTTAAGTAATTAAACCACAACAATGTCAACATTTCTTCAAGCAGTCAGAAACAACATACCAGAAAAGGACAAATCGGAAATAACGGAGAGTGACCTGAAAAAATGGGGACTAGGTGCTATTCATCTAAGGTCTTATCAGGTGGATGGAGTGAGGTGGCTGTCACAGTGTATGAAGAACCAGCAGGGCTGCATCCTTGGAGATGAAATGGGTCTGGGCAAGACTTGTCAGACCATATCTTTGCTGGCATATGCTCGAGGATGCCTGAAGATAAATGGACCATTCCTTGTGCTTTGTCCCTTATCAGTTTTGGAGAACTGGAGACAAGAGTTGGAACGCTTCTGTCCCAGTCTTTCTGTGCTCTGTTACACTGGAGATAAAGAGAGAAGGGCAGAGCTCCAGGAAGAGCTTAAGAATGGCAAAAACTTCCATGTTCTTCTCACCACCTATGAGTTTACAGTGGGTTTTCGAGTGCTGTTGACAGGCACTCCCATTCAGAATAACTTGCAAGAAGTCTATTCCCTCCTCACCTTCATCCAGCCCAGTCTGTTTCTCCCTGAAGACGTTGAGGACTTTGTTAGTGCATATGCAGACGTACAGACTGAACCTGCTCTTGCCGATGAGCTTCATCGAGTGCTCCAGCCTTTTTTGCTACGCAGAGTTAAAGCAGAGGTGGCAGCCGAATTGCCCAAGAAGACAGAACTTGTGGTTTTTCATGGGCTGTCTTCTCTTCAGAAGAGATACTATAAAGCCATTCTGATGAGAGACCTTGGTTACAGTTATGAGCGTCTGGATGGTTCAGTCCGGGGAGAGGAACGTAACCTAGCTATTAAAAATTTCAGTACCAAAGATGTTTTTATATTCCTTCTCAGCACCAAAGCTGGAGGGGTTGGCATGAACCTAACAGCAGCAGATACTGTGATATTTGTGGACAGTGATTTCAACCCACAGAATGATCTACAAGCAGCAGCCAGAGCCCACAGAATTGGCCAAACAAGGCCTGTTAAAGTGATCCGGCTCCTCGGTAGAGATACTGTAGAAGAGATCATCTATTCCCGTGCCATGTCTAAACTCCGTCTCACAGACACGGTGATTGAGGAGGGACGTTTTTCTTTGCTGGACCAGGCTCAGTCCGCAGCTTCTGGCCTTCAGTTGAGTGAGATCCTGAAGTTTGGTGTGGATAAACTGCTGTCATCAGAGGAGAGCTCTATTCAAGACGTGGACCTCAAGCTGATCCTAGGGCAGTCTCGAGATGGGCGATGGCTAACGGATGAAGAGCATGTCAAGCTTAATGAAAGTGATAAAGAGGAAGATGAGGACATGGAGGGTCAAAACCACATGTACTACTTCGAGGGGAAGGACTACTCTAAAGACCCCAGTGCCGAGGATGAGAAGACCTTTGAACTGTTATTTGAGAAGCAGTTAGCTGATCTAGAGGATGCTGGGAAGGAAGGCCGTGCACTTCGTAATAAAGCTGGGGTGTCCCTGACTGGACCCTTGATAGACCCAGGGAGGAAGAAGAGACCTCTTACAGAATCAGAGTTAGAACAGAGACGTCAAAAGAGACAAGAAGCTGCTGCAAAGAGGGCCAAGCTACAGGAGGAAAGGAAGAAGCAACAAGAAGAACTAAATTACAAGAAGAAGATGGCATGGTGGGACTCGTGTGGCTACAGATCGCTGTGCTTGCCAAGTGTCGACAGCGAGGGTGAGGATATGGAGCCCGATGAAGATGATGATGTCAGCTGGAGCTCCAATGATTCGGATCACACAGCCATTCGCTATGTGCTGGGTGATGTAACTCACCCTCAGGCTGATCGAGAAGATGCCATCATTGTGCACTGTGTTGATGACTCTGGACACTGGGGCCGAGGAGGATTGTTCACCGCACTGGAGCTCAGATCAGATGAGCCAAGGAAGCAGTATGAGTTGGCTGGTGACATGAATGACTTAGAACTTGGGAATGTTCTGCTTTTTCCTATTGATGATAAACAGTCGAGGCTCAGTGGAAGAGACTACCTGGCACTCATAGTTGCCCAGCAGAGGGATAAAGCCAACAAGTTGTCAGGCATTCGGCTCACTGCCTTGGATGAGGGCCTTAAAAAGATCTACAGAGATGCCAAACAAAAGAAGGCAAGTGTCCATCTGCCTCGGATTGGTCACTCAACTAAAGGCTTCAACTGGTACGGTACAGAGAGACTCATCCGCAAGCACCTGGCCACCAAAGGCATCTCCACATCTATCTACTATTATAGACGAGGCACTTCACACTCTTCTACAGTTTATTCTTCCACCACATGCACAGCTACTCCATCAACCTCAGACTCTGCAGCATCAGCAGCAGGGTCCCCACACTCCTACAGTCCCCTTGGTAACAACAAAGACCTTACAAAGTCACCAGAAATCTCCACTACGTCACCTGAAAGTCAGGGCACACCAGGGTTGGCTGACTTCATGAGAGGTGTTCATGTCTACTTCTACAACATGGCTGCTACAGAAAAGAAGAAGCTCGCTCGCTACCTTATCACATATCCTTTCACATCCCTTCATTACCTACATATTTCATATGCATGAAACAATAATGAACAAAGGTGTTTAACCACTATGCCAACATGTCTATCTTTATCACATTTATGATGAAAACGCTGATAGTTTATTCCTTAACATTTCTGCACATATGATGGTGATGAAGAGGATCTCATGAGCTCACACATCACTCATATCGTAGGAGAGGTAGAAAGCCCTGTCCATGTAAAGGTAGTACAATCAAAACACTTTTTAAAGGGATA

Function

symbol description
chd1l Predicted to enable nucleotide binding activity. Predicted to be involved in cellular response to DNA damage stimulus and chromatin remodeling. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Orthologous to human CHD1L (chromodomain helicase DNA binding protein 1 like).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K20092 CHD1L; chromodomain-helicase-DNA-binding protein 1-like

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_07701724_07717637.mRNA True 3100 mRNA 0.46 18 7701386 7717852

Neighbor

gene id symbol gene type direction distance location
CI01000340_07698442_07700739 NA coding upstream 647 7698442 ~ 7700739 (+)
CI01000340_07692812_07697115 TMEM45A coding upstream 4053 7692812 ~ 7697333 (+)
CI01000340_07641488_07649078 NA coding upstream 51892 7641146 ~ 7649494 (+)
CI01000340_07486593_07487826 NA coding upstream 213560 7486477 ~ 7487826 (+)
CI01000340_07482030_07483694 NA coding upstream 217484 7482030 ~ 7483902 (+)
CI01000340_07721395_07728614 TRAF3IP2L coding downstream 3543 7721395 ~ 7728752 (+)
CI01000340_07752737_07754368 NA coding downstream 34885 7752737 ~ 7755297 (+)
CI01000340_07794457_07834047 NA coding downstream 75916 7793768 ~ 7835726 (+)
CI01000340_07920331_07924545 NA coding downstream 202479 7920331 ~ 7924545 (+)
CI01000340_07929169_07934135 NA coding downstream 210630 7928482 ~ 7934419 (+)
G490417 NA non-coding upstream 26117 7675055 ~ 7675269 (+)
G490289 NA non-coding upstream 29026 7671424 ~ 7672360 (+)
G490401 NA non-coding upstream 68413 7632754 ~ 7632973 (+)
G490399 NA non-coding upstream 80912 7620226 ~ 7620474 (+)
G490398 NA non-coding upstream 82748 7618416 ~ 7618638 (+)
G490448 NA non-coding downstream 14166 7732018 ~ 7732811 (+)
G490482 NA non-coding downstream 25528 7743380 ~ 7743594 (+)
G490466 NA non-coding downstream 29818 7747670 ~ 7823029 (+)
G490455 NA non-coding downstream 141424 7859276 ~ 7871160 (+)
G489634 NA other upstream 1000598 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 3036201 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 3299890 4399419 ~ 4401496 (+)
G487133 NA other upstream 3718841 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 4769586 2930635 ~ 2933935 (+)
G490645 NA other downstream 1320960 9038812 ~ 9043101 (+)
G490826 NA other downstream 1407332 9125184 ~ 9131397 (+)
G490839 NA other downstream 1517121 9234973 ~ 9237559 (+)
G490896 NA other downstream 2113621 9831473 ~ 9845052 (+)
G492194 NA other downstream 2933831 10651683 ~ 10652694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032168 chd1l coding NC_007117.7 CM002890.2 36844127 ~ 36877587 (+)