CI01000340_07721395_07728614 (TRAF3IP2L)


Basic Information

Item Value
gene id CI01000340_07721395_07728614
gene name TRAF3IP2L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7721395 ~ 7728752 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_07721395_07728614.mRNA
ATGGATAAAATCAGTACTAAGGACGCCATTTGTGACTCAGACTCCACCGATTCCCAACCCTTCCACACTGACAGTTGCATGTCTGAGAATGAATCTTCTTTGAGTGCACAGGCTGACTTCACCGATATCTGCAGAGACAGAAAGACCAACTACAGACCTTACCAGCCCCCGCTAGGTCTACCCTCCGGCTACAGTCCCCAGACACCCTTTCCCAGTCAGACGGAAGTATGTCTGAGCACCTTAGAGCCGCACAACGGAGACCTGCTCCACTCGAGTTCATTGAGCAGCAGTTCGGTGGAATACCCTAGTGGCAACCTTCCCTCTTGCTTGGTGTCTGGAAATTACTGCAGTTATCCTGGTGATTCCTGCTACTCTTGCTCTCCAGACAGGCACAGTCTGGGAGAGGGGAGTTTAGAACAGCCACGTTCACTGCACTCTATCCCAACTGCGTTTGCGCCTCACAGCTACTGCATGCCCCCGCAACCCTGCGCGTCCCGTGGGCCACCCTGCTGTAGTCAGTATCCTGTGGATGTGTATCAGATGGATCATGGCTGTCATTACAGACCACATTACCACATGCCCTGTTGGCCTTCGCGCCTTGAAAACAGCAGACAATCAGCCTCAGAGTTCACTCATAGCGGCCACACCTCTCCTCACCCTCGAGCTAAACTAACCCCAAGCACAGCCCCTCTATCCCTGGAGCAAAGGAAGGTGTTTGTTACTTATGAAGCAGACAGCGAAAAACATGTCAAAGAGATCATCAACTTTGTCGCCCTACTGAGACACAACGGCTTCTACACTCACATTGACATGTTTGAACAACAGTTCAAGAGCATAAGCAAGATTGACTTCATGGAGAGATACATCAGCGAAAAAGACTATCTGATCATCATAGTCATTAGTCCAAAGTACCACGAGACTGTGACCAATGCCTCGTTTTACATGGAAAACGATGAAACACTGAACACTGTCTACATACACAAGCAGTTACAAAATGAATTCATTCAGAACGGGGCCAGGAATTACAGATTCATCCCCATTTTGTTTCCTGGTGCCAAGAAGTGCCACGTCCCTTCATGGCTTCAAAGCACACAAATCTTCACCTGGCCCAGGGACCGAGATGACATTCTTCGTCGACTCATGCGTGTTGAGAAGTACAACCCTCCACCCATTGGAGAGCTGCCCACCATTGTCTCCATCCCCATTTAGTTGGTTAGTTTTCTATGTAGACCCATTATATGTCAGTTATGAACAGGCCTGTGATCCGTTGTAAGTTTATTTGCCCCTCTGAACTACAAGACTGTTTAATATGCTAAAACCCCTGAAGTTGTAACCTTTTGTCGTTTA

Function

symbol description
traf3ip2l Predicted to be involved in humoral immune response and positive regulation of I-kappaB kinase/NF-kappaB signaling. Human ortholog(s) of this gene implicated in chronic mucocutaneous candidiasis and psoriasis 13. Orthologous to human TRAF3IP2 (TRAF3 interacting protein 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_07721395_07728614.mRNA True 1347 mRNA 0.48 8 7721395 7728752

Neighbor

gene id symbol gene type direction distance location
CI01000340_07701724_07717637 CHD1L coding upstream 3543 7701386 ~ 7717852 (+)
CI01000340_07698442_07700739 NA coding upstream 20656 7698442 ~ 7700739 (+)
CI01000340_07692812_07697115 TMEM45A coding upstream 24062 7692812 ~ 7697333 (+)
CI01000340_07641488_07649078 NA coding upstream 71901 7641146 ~ 7649494 (+)
CI01000340_07486593_07487826 NA coding upstream 233569 7486477 ~ 7487826 (+)
CI01000340_07752737_07754368 NA coding downstream 23985 7752737 ~ 7755297 (+)
CI01000340_07794457_07834047 NA coding downstream 65016 7793768 ~ 7835726 (+)
CI01000340_07920331_07924545 NA coding downstream 191579 7920331 ~ 7924545 (+)
CI01000340_07929169_07934135 NA coding downstream 199730 7928482 ~ 7934419 (+)
CI01000340_07948302_07952600 NA coding downstream 218676 7947428 ~ 7952706 (+)
G490417 NA non-coding upstream 46126 7675055 ~ 7675269 (+)
G490289 NA non-coding upstream 49035 7671424 ~ 7672360 (+)
G490401 NA non-coding upstream 88422 7632754 ~ 7632973 (+)
G490399 NA non-coding upstream 100921 7620226 ~ 7620474 (+)
G490398 NA non-coding upstream 102757 7618416 ~ 7618638 (+)
G490448 NA non-coding downstream 3266 7732018 ~ 7732811 (+)
G490482 NA non-coding downstream 14628 7743380 ~ 7743594 (+)
G490466 NA non-coding downstream 18918 7747670 ~ 7823029 (+)
G490455 NA non-coding downstream 130524 7859276 ~ 7871160 (+)
G489634 NA other upstream 1020607 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 3056210 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 3319899 4399419 ~ 4401496 (+)
G487133 NA other upstream 3738850 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 4789595 2930635 ~ 2933935 (+)
G490645 NA other downstream 1310060 9038812 ~ 9043101 (+)
G490826 NA other downstream 1396432 9125184 ~ 9131397 (+)
G490839 NA other downstream 1506221 9234973 ~ 9237559 (+)
G490896 NA other downstream 2102721 9831473 ~ 9845052 (+)
G492194 NA other downstream 2922931 10651683 ~ 10652694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032169 traf3ip2l coding NC_007117.7 CM002890.2 36877968 ~ 36901130 (+)
bowfin (Amia calva) AMCG00014269 LOC108441420,LOC107582737,LOC107726519,LOC106592197 coding CM030128.1 CM030128.1 7347452 ~ 7365740 (-)