CI01000340_08024828_08028479 (GTPBP6)


Basic Information

Item Value
gene id CI01000340_08024828_08028479
gene name GTPBP6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8024828 ~ 8028608 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_08024828_08028479.mRNA
ATGAATCTTAACAAGATAAGTGTCTTGACCAAGCATGTGTTTCTATGCAAACATGTCTTGAGTAGGTGGTACATGAACTTTGCTAAATGTAAACCAATCAAATTTCCTCAATGTACTTCAAAATTAGTTGCTACCATCTTACCATGCACAAGACAAAGTTTAAAGACTGGGGTTGCAGTTCCAGTTCTACCAGCAAGGCCTTTGTCTTTGACAGCTTGCATGTTCAAGAGCAAAACTCACAGCACAGATGACAACCTAGAAGAAGAAGACTATGAAATTGATGAAGCTGAAATAGAGGAGCTGTTCCAGCAGCAGATTCCCACAGGTATTGGTAAAGAAGACCACAGGATCTTCATTGTTCATCCTGATGTGAAATGGGGCAGCAGAAAGCAGTATCTTACCACAGCGGCACTTCAGATGGAAGAGGCTGTTGGGCTGGTGAACACTTTACACAAATGGAGCGTTGTTGACAAGATCATCCTTTCTACCAAGACACCAGAAAATAAAAGAATTTTCGGCAAGGGAAACTTCCAGACTCTTACAGAAAAGATCAAAGCTACACCTGGGGTCACAGCTGTCTTTGTGAACGTGGAGCGCCTTTCACCTTCCTCGGAAAAAGAACTGCAGGAAGCCTGGGGAGTAAAAGTTCTTGATAGGTACTCGCTTGTTCTGCACATTTTCCGATGTAACGCTAAAACAAAAGAGGCCAAACTGCAGATCTCTTTAGCAGAGATTCCCTTGCTCAGATCACGCCTGAGAAATGAAGTAGCAAACTTAGACCAGCAAGGTGGCGGCTCAAGGTACATTATGGGCTCAGGTGAAACCTTGTATGAAGTGCAGCAGCGATTGTTGAAAGAGCGAGAGCTGAAGATCCGATCGGCCCTGGAGCGACTTAGGAAGAAGAGGCACCTGCTGCGCTCCCAGCGCAAACACAAAGACTTTCCCATCATCTCTGTCATGGGCTACACCAACTGTGGTAAAACAACTCTGATTAAAGCACTGACTGGAGATGCTGGTCTTCAGCCTAAAGACCAGCTCTTTGCCACCCTGGATGTTACTGTACATGCAGGACAGCTGCCAAGTCACATGACTGTACTGTATGTAGACACCATTGGCTTTTTGTCCCAGCTCCCTCACCAGCTTATTGACTCTTTCTCTGCCACACTGGAGGATGTGACACATTCTGACCTTATAATTCATGTGAGAGACATCAGTCATCCAGAAACTGTGAATCAAAAGGTCAATGTACTGAACGTCCTAAAGAATCTTCAGATTCCAGAAAGACTCCTCAACTCCATAATAGAGGTGCACAATAAGATTGACCTCATTGAAGGTTGGCTGTATAAGGAGGCGACGGTTCAGGCAGTAGATGATGTTGGAGATGACTGCACTGCCAATGTCAAGGTCATCATTAGCCAAGCTGCATATGGCCGCTACAGGAAGCTGTTTCAGGTCACCTAGTAACAGCTGGCCCCAGTTTCACAGCCAGAACAACATCATCCAAAATAATTCACAAAATAATGATTTGTATATATTTATTTGCTTTATAAACAGTGTATTTAAAATATCTCAAAACTATATTTTACTACA

Function

symbol description
gtpbp6 Predicted to enable ribosome binding activity. Predicted to be active in cytoplasm. Orthologous to human GTPBP6 (GTP binding protein 6 (putative)).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_08024828_08028479.mRNA True 1590 mRNA 0.44 9 8024828 8028608

Neighbor

gene id symbol gene type direction distance location
CI01000340_08017397_08018781 NA coding upstream 5824 8017350 ~ 8019004 (+)
CI01000340_07954531_07957240 NA coding upstream 67520 7954531 ~ 7957308 (+)
CI01000340_07948302_07952600 NA coding upstream 72122 7947428 ~ 7952706 (+)
CI01000340_07929169_07934135 NA coding upstream 90409 7928482 ~ 7934419 (+)
CI01000340_07920331_07924545 NA coding upstream 100283 7920331 ~ 7924545 (+)
CI01000340_08076352_08117930 SLC9A7 coding downstream 47744 8076352 ~ 8119164 (+)
CI01000340_08127948_08139978 TUBGCP5 coding downstream 99340 8127948 ~ 8141062 (+)
CI01000340_08150345_08170718 CYFIP1 coding downstream 121737 8150345 ~ 8170846 (+)
CI01000340_08175512_08182712 CYFIP1 coding downstream 146643 8175251 ~ 8183269 (+)
CI01000340_08204216_08250869 HERC2 coding downstream 175608 8204216 ~ 8251570 (+)
G490465 NA non-coding upstream 62685 7959672 ~ 7962143 (+)
G490455 NA non-coding upstream 153668 7859276 ~ 7871160 (+)
G490466 NA non-coding upstream 201799 7747670 ~ 7823029 (+)
G490482 NA non-coding upstream 281234 7743380 ~ 7743594 (+)
G490502 NA non-coding downstream 20007 8048615 ~ 8048994 (+)
G490437 NA non-coding downstream 21279 8049887 ~ 8051962 (+)
G490503 NA non-coding downstream 23478 8052086 ~ 8053101 (+)
G490442 NA non-coding downstream 27577 8056185 ~ 8065521 (+)
G490471 NA non-coding downstream 157463 8186071 ~ 8186347 (+)
G489634 NA other upstream 1324040 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 3359643 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 3623332 4399419 ~ 4401496 (+)
G487133 NA other upstream 4042283 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 5093028 2930635 ~ 2933935 (+)
G490645 NA other downstream 1010204 9038812 ~ 9043101 (+)
G490826 NA other downstream 1096576 9125184 ~ 9131397 (+)
G490839 NA other downstream 1206365 9234973 ~ 9237559 (+)
G490896 NA other downstream 1802865 9831473 ~ 9845052 (+)
G492194 NA other downstream 2623075 10651683 ~ 10652694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032177 gtpbp6 coding NC_007117.7 CM002890.2 37441789 ~ 37454910 (+)