CI01000340_08076352_08117930 (SLC9A7)


Basic Information

Item Value
gene id CI01000340_08076352_08117930
gene name SLC9A7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8076352 ~ 8119164 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_08076352_08117930.mRNA
ATGGAGGCGGTCACAGCACCAAAGCCATGGACATTATATGCATTAGGACACAGATCACGGTTTCCTATTTTAATGTTCATTTTAAGCCAATGTTATCGGATAAGAGCAGATGACGGCGGCATGGAGGAACTTGCCACGGAGAAAGAGGCAGAGGAAAGTCACAGGCAGGACAGCGTGAATTTACTTACATTTATTTTGCTTTTGACACTCACTATCCTCACAATATGGCTCTTCAAACACAGAAGAGTGCGCTTCCTGCACGAAACCGGACTGGCTATGATATACGGTCTGTTGGTGGGAGTTATTTTGCGGTATGGCATTCCCTCCACCAGCTACCATAATAAAACTCCTCCGAGTTGCACCCTGAAGGAAGGTCCTGTCAGCACGGTGCTCCTCAACGTTAGCGGAAAGTTCTTTGAGTACACTCTCAAGGGGGAGATCAACCTTAGAGAAATCCACAGTGTGGAGCAGAACGACATGTTGCGCAAGGTGACCTTTGACCCAGAGGTGTTCTTCAACATTCTGCTACCTCCCATCATATTCCATGCCGGATATAGCCTCAAAAAGATTGTGCTGAGTGAGCAGGGAGGCCCTGAGGAAGTGAGAGGAACTGGCTTCTGCCAGCTGTGTGTGTTTGAGACAGAAGCACAAGGCATTGTTTCCTCTCTTTGTTACACATTTGACTTTTTTGATGATCCTTACAGAATGGAGGAAAAAAACCTCATGTATGGGGTGGTGAAACTGATGCATGTTTTCGGTCAACTCACTGACAAGTTCTACTACACAGACTGCCTCTTTTTCGGTGCCATCATATCTGCCACAGATCCAGTCACAGTGCTTGCGATCTTTAATGAGCTCCATGCTGATGGTGATCTCTATGCACTGCTGTTCGGAGAGAGTGTCATGAACGACGCAGTCTCCATAGTGCTTTCATCGTCAATTGTGGCGTATCAGCCTGCAGGAGTCAACACACACACATTTGATGCCTCTGCCTTCTTCAAATCGGTGGGTGTCTTCTTGGGCATCTTCAGTGGCTCTTTCGCCATGGGAGCAGTCACTGGAGTAGTCACTGCCCTCATATCCTTTTGCATGACGGCTCTGTTCTTCCTCATGTCTTGGAGTACTTTTCTACTGGCTGAAGCATGTGGATTCACAGGTGTTGTCGCTGTGCTGTTTTGTGGAATCACACAGGCTCATTATACCTACAACAATCTCTCGGAGGAGTCGACCAAACGTACTAAACAGTTGTTTGAAGTGCTGCACTTCCTGGCAGAGAACTTCATCTTCTCGTACATGGGCCTGGCACTCTTCACCTTCCAGAATCACGTCTTCAGCCCCATTTTCATTGTTGGAGCCTTTATAGCCATCTTTATCGGCCGGGCCTTGAACATCTACCCCTTGTCTTTCCTGATTAACCTTGGCCGAAGACACAAAATCAGTGGAAACTTTCAGCACATGATGATGTTTGCAGGGCTGCGAGGGGCAATGGCATTCGCTCTGGCGATCCGCGACACCGCCACATACGCGCGACAGATGATGTTCACCACAACCCTGCTCATTGTGTTCTTCACAGTTTGGGTGTTTGGAGGAGGCACCACGCCAATGCTGTCCTGGCTACATATCAGGGTTGGAGAGTCTTCTGCTGCCGAGAAGGAGAGGCTGCGTAGACTGAGGAATTACATCAGTACATCTGCAACTGCATACAGGTCGACAACGAGAGCTGCTCTGACCGTCTTACAGGAAGGATATGTTCAGCATCCACCATGTATATATATGCTTTCCGCAGCCGTGTGCAGACTGTGTAGAATGTGGATGGAACCCAGTCAGAAGGGCAGAGCAAGACCAAGCAGGAAAGCGCCTGGCTCTTTAGACTTTGGTATACTTTTGACCACAAGTATCCTTTCAGCATGCTATTCACAACAACACACACGTACACGCTTTTGTGGTCCTGTCATTAAGAACTCGAGCACGGCTGAGCATTACTTCTTGCATTCACCGTTCTATTCTCTGCTCTTCAGTGAGCCTAGGCATTACCTGAAGCCTATCCTGACCCATAGCGGCCCCCCCCTGACCTCCACCCTGCCGGCCTGCTGCGGTCCGCTGGCTCGATGTCTGACCAGCCCCCAGGCCTATGAGAACCACGAGCCACTGCGAGACAGTGACTCAGACCTCATCCTGAACGAAGGAGACCTGACACTGACCTACGGCGACACGGCCATCACGGCCAACGGAGCCTCGTCCTCCTCCGGCCCCGAAGGATCAGCCGGGAGCTGGGGCTTGAACGGCAAACGCAGCGACAGCACATCGGAAGACGCTCTGGAACGAGAACTGGATACACGTGAACATGAGCTTTTGAGCCGTGGCACACGTTTAGTTTTCCCCATCGAGGACCACGCTTGACCCCGCCCCCAAACCTTAAATCACGCCTCCCTGTGCTTCATACCTTAACTTTTCTTGCACATAACTCCATCTGACCATTCATGACCCCTCCAAAGATTTCATGCAGTGGGTCTGAAAAATCAAAGAAACAGAAAGATGGAGAGCAGGAGGGTTTGCGCTCGGGATGTATTTACCAGAATGGAGGTGGCGTAATTGATGATATGGCTGACTTTGTGATTCATTGTCTCCTCATGAAAATGTGACTTGTAGGAGGAAAAAGAATATAAAACTGCTGTTAAGAATGCATTTCGAATAGCTTTGGACACTAAATGTCCTTATTGCTGTTTTATATGATAATGGACTGACGCAGAACGGTCTCTGCTGCCCTTAACATTCACTTTCATATGATCACCACCTGCCACATATTAACATTTTAAGTCATTAATTCTTTGTTTTCTGTTAGAAATGCTGCCACAAACTAGAAATAAGATCGACATATATGACTGAGCCAGTTTTTCTTGAAGGGAAGTCAGTTTTTACATATAAACAGCCAGTATTACATTAGATGATCTTTTTTTTTGCATTAAAATGCTCACCTCTACCATCATGCAAATGAGTGAGCAGATCATAATGTTTGTAAATACTGCAGGCCATACATTGTTTGACATGAGTGCATGTTTATCTCATGACTGCATATGGGAACCTTGTAATACTCAACTTTAGTCAGTTGGAGTTTACATTTTCTGCAATATCTTGGTTGTATGAAAGCCAGGTTTACATGCTGGTTGTTGTTAATATGAATGTTGATCTGCACAGACGTGGGACTTTTTTCATTTTTAACAGCTGGATGCAACCAGAGTGTATGAGCCATGCACTTTAGCTGCAGCTGAGCTGCAGTCCTTGCATGTATTGCTGTATTATATTAGAATATTAACCACTTGCACACTCTCAGACAGAATTTATGCGACGAGGGATGATGTAATCATCAAGGAGACTTCATATAAGAATCAAAGAGTTCACGTGTGTGGCGTTCATTTTGCGCCTCCTCACGTTAGAATGTTCTTGTACGTGGATCTTTACATTATGTATGAGTTGCTATATGGCAGTCGGCGATTCTGAAATTAGGAATCTGTAATGTTCGGCATGATGTTGACCCAGCTGTCTGTTCATACAGTATACGGATGGCCCCGTGCCATCAACCGCGAACGTGCATTCCTTCTATCCTCCGTGTCTAGAAATGAATTCTTGTTAATGA

Function

symbol description
slc9a7 Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to act upstream of or within regulation of pH; sodium ion transport; and transmembrane transport. Predicted to be located in endosome membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and recycling endosome. Is expressed in female organism; gill; and testis. Human ortholog(s) of this gene implicated in X-linked intellectual developmental disorder 108. Orthologous to human SLC9A7 (solute carrier family 9 member A7).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K12041 SLC9A6_7, NHE6_7; solute carrier family 9 (sodium/hydrogen exchanger), member 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_08076352_08117930.mRNA True 3634 mRNA 0.47 17 8076352 8119164

Neighbor

gene id symbol gene type direction distance location
CI01000340_08024828_08028479 GTPBP6 coding upstream 47744 8024828 ~ 8028608 (+)
CI01000340_08017397_08018781 NA coding upstream 57348 8017350 ~ 8019004 (+)
CI01000340_07954531_07957240 NA coding upstream 119044 7954531 ~ 7957308 (+)
CI01000340_07948302_07952600 NA coding upstream 123646 7947428 ~ 7952706 (+)
CI01000340_07929169_07934135 NA coding upstream 141933 7928482 ~ 7934419 (+)
CI01000340_08127948_08139978 TUBGCP5 coding downstream 8784 8127948 ~ 8141062 (+)
CI01000340_08150345_08170718 CYFIP1 coding downstream 31181 8150345 ~ 8170846 (+)
CI01000340_08175512_08182712 CYFIP1 coding downstream 56087 8175251 ~ 8183269 (+)
CI01000340_08204216_08250869 HERC2 coding downstream 85052 8204216 ~ 8251570 (+)
CI01000340_08259928_08321896 OCA2 coding downstream 140764 8259928 ~ 8321896 (+)
G490442 NA non-coding upstream 10831 8056185 ~ 8065521 (+)
G490503 NA non-coding upstream 23251 8052086 ~ 8053101 (+)
G490437 NA non-coding upstream 24390 8049887 ~ 8051962 (+)
G490502 NA non-coding upstream 27358 8048615 ~ 8048994 (+)
G490465 NA non-coding upstream 114209 7959672 ~ 7962143 (+)
G490471 NA non-coding downstream 66907 8186071 ~ 8186347 (+)
G490574 NA non-coding downstream 239079 8358243 ~ 8358505 (+)
G490575 NA non-coding downstream 240304 8359468 ~ 8359761 (+)
G490693 NA non-coding downstream 521383 8640547 ~ 8641475 (+)
G490720 NA non-coding downstream 673807 8792971 ~ 8793223 (+)
G489634 NA other upstream 1375564 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 3411167 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 3674856 4399419 ~ 4401496 (+)
G487133 NA other upstream 4093807 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 5144552 2930635 ~ 2933935 (+)
G490645 NA other downstream 919648 9038812 ~ 9043101 (+)
G490826 NA other downstream 1006020 9125184 ~ 9131397 (+)
G490839 NA other downstream 1115809 9234973 ~ 9237559 (+)
G490896 NA other downstream 1712309 9831473 ~ 9845052 (+)
G492194 NA other downstream 2532519 10651683 ~ 10652694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021351 slc9a6 coding CM030130.1 CM030130.1 15407884 ~ 15426650 (-)