CI01000340_11005204_11007357 (LRRN1)


Basic Information

Item Value
gene id CI01000340_11005204_11007357
gene name LRRN1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 11004438 ~ 11007434 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_11005204_11007357.mRNA
AGAATCTCACCTCACCATCTCTTTGGTGCTATAGGAATTCCAGCTCAGATCTGATAAGATAAACAAATACAATCAGAATGGCAAGAGGGACTTTCTTTTTTGTTGTGCAGGGCCAGATTTGTTTCTTCCTGTTTTTGGCTTTACTTGGCCTCTCTTCAGTTCAGAGTACAGAATGTCCGCAGCTTTGTGTGTGTGAGATCCGGCCTTGGTTCACACCCCAGTCCACCTACAGAGAAGCAACTACTGTTGATTGCAATGACCTTCACCTTACGCGCATCCCTGGGAACCTGTCCGCTGACACGCAGGTGTTGCTTCTGCAAAGTAACTACATTGCCAGAACTAGTGAGGAACTGGAGCAGTTACTGAATCTCACAGAACTTGACCTGTCTCAGAACAATTTCAGCAACATCCGTGATATCGGCCTGACCAACATGTCACAACTCACAACGCTTCACCTGGAGGAAAACCAAATAGTCGAGATGCCTGACTTCAGTTTGCAAGACCTCACCAATCTACAGGAGCTGTACATTAATCACAATCAGATCAGCTCCATTGCACCCAATGCCTTCGCCGGATTGCGTAACCTTCTGAGACTCCATCTGAACTCCAACAGACTCAAGGCCATTGACAGTCGTTGGTTTGAATCAACCCCCAACCTGGAGATCCTGATGATTGGGGAAAATCCTGTGGTCGGCATCCTGGATTTGAACTTCAAACCTCTTACCAACTTGAGAAGCCTGGTCCTCGCAGGAATGGAGCTCACTGATATCCCAGGCAATGCGTTTGTTGGACTAGACAACCTGGAGAGTCTCTCCTTCTATGACAATAAACTAGTTCGGGTGCCACAGACTGCTCTGCAGAAGCTTCCAAACCTGAAATTCCTGGATTTGAACAAAAATCCAATACATAAAATTCAAGAGGGGGACTTTAAGAACATGCTAAGGCTGAAAGAACTTGGCATTAACAACATGGGAGAACTTGTGTCCATTGATCGCTTTGCCCTGGATAACCTCCCAGAGTTGACCAAACTCGAAGCCACCAACAACCCCAAGTTTTCCTACGTGAGCCGTTTAGCATTCCGTGACTTGCCGTCACTAGAGAGTCTAATGCTCAATAACAACGCTCTAAACTCCCTCTACCAGGCTACGGCGGAGTCCCTGCCCAACCTGAGGGAGATCAGTATCCACAGCAACCCGCTGCGCTGCGACTGTGTAATTCAGTGGATGAGCTCAAACAAGACAAACATTCGATTTATGGAGCCTCTTTCCATGTTTTGCGCGATGCCACTTGAGGTTAGAGGTCAGCGTGTGAGAGACGTGCTTTCTCATGAAACTTCAGGCCAGTGTCTGCCCATGATCTCTCACGACACTTTCCCCAATCACCTCAACCTAGACATCGGAATGACGGTAGACCTTGACTGTCGTGCTATGGCCGAACCTGAACCGGAAATATACTGGGTGACCCCATCTGGTAACAAAGTCATGATGGATACAGTGTCCGATAAATACCAACTCAGCAGTGCAGGAACTCTGCGCATATCCCATATTCAGGTGGACGACTCTGGCCACTACACCTGTGTGGCCCAAAATACAGAAGGAGCGGACACTCGGGTGACCGCCATTCGAGTCAATGGAACTCTTCTGGATAGCACCCAACTTATGAAGATCTATGTGAAACAAACCGAGTCCCACTCAATTTTAGTGTCCTGGAAAGTGAACTCCAATGTCATGACGTCCAATCTAAAGTGGTCGTCTGCCACCATGAAAATTGACAACCCTCACATCACCTATACAGCTAAAGTTCCTGTAGATGTTCATGAGTACAACCTCACACACCTTCAACCAGCCACTGAGTATGAGGTCTGTCTCTCAGTCTCCAATATCCACCAGCAGACCCAAAAGTCATGCGTCAACGTCACAACCAAGCACGCCACGTTTGCAGTGGAAATCTCAGAGCAAGGCACCAATACGGCTCTGGCAGGTGTCATGGGCACAATACTGGCCATCATCAGCCTAGGCTCCATCACGGTGTACATTGCAAAGAGATGGAAGAGGAAGAACTACCATCACTCCTTAAAGAAGTACATGCAGAAAACCTCCTCCATCCCCCTAAACGAACTGTATCCTCCCCTCATTAACTTATGGGAGGCAGACAGTGAAAAGGACAAGGACGGTTCTTCAGACACTAAGCCAACACAGGTGGACACAACAAGAAGTTATTACATGTGGTGAAGCTTACCAGACGTTTTTTCTTCTTTAGAGCACAAAGACACATCTTTACTTATTTGTGCGTAAAAAGACATGGATTTCTTTTTTTTCTGCTTTGCTTACTTGCAAGCAACTATTCAGACTGATATCTCTGACTTTTTAGTAGAGTGTATTGCCTTTTCATCTTCTTTAACTTTCAATATGGCAGCTTTGTTTAGCTTCCGAGACATGTTAGTAGCTGTGCTTTTTCTTTTTGTTCATTATATTTTCATAGCACAGCATAGATAATGTCAAGGATTGACTTTGGGTCGATTGATGCTGTAGTACTGTATCTGATCCAATATTGATATGTCTTTGGCAGTATTCATAGAGAATGCATTGTTTCTTTCTCTCTTGCGTAAGACAGTTTAACTGTTGTGCACTGAAATATATTAACAAATTTGTCTTTGGACTCCAGTGTAAGCTGACAAGGTGAGTTTAGACTTGATACACTGTCTATTGAAAAATGTTAGCAATTGTTCTGTAATGTTGTATCAACTATAATTTGAACATTTTGGGTTTTCTCAAAAGTAATTTTTGATTTAGAACTAAACTTTGCAGATTAAAGAATTGTAAACCAGCAATAGAAATGTGAATGTTAAATAATTAGGTTGTAGAAAAATGCTTTTTTTAATTACTCAGATTCTTCTTCTTTTTTTTTTTTAATTGGCTAGAATCTGTTAATCATTTAATTTTGTTGTAATTTACACATGCAAAATATGTTGCATATTACAGTGCAAACAAAAATAAA

Function

symbol description
lrrn1 Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in basal plate midbrain region; hindbrain neural keel; nervous system; neural plate; and somite. Orthologous to human LRRN1 (leucine rich repeat neuronal 1).

GO:

id name namespace
GO:0007409 axonogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_11005204_11007357.mRNA True 2997 mRNA 0.43 1 11004438 11007434

Neighbor

gene id symbol gene type direction distance location
CI01000340_10980323_10984372 GLYCTK coding downstream 20066 10980086 ~ 10984372 (-)
CI01000340_10962027_10966453 NA coding downstream 37078 10961724 ~ 10967360 (-)
CI01000340_10951922_10954429 NA coding downstream 50002 10951834 ~ 10954436 (-)
CI01000340_10935675_10941448 ARL8B, ARL8BA, ARL8A coding downstream 62757 10935332 ~ 10941681 (-)
CI01000340_10924696_10934000 EDEM1 coding downstream 70438 10924384 ~ 10934000 (-)
CI01000340_11086607_11088953 NA coding upstream 78725 11086159 ~ 11089394 (-)
CI01000340_11092046_11095664 TRNT1 coding upstream 83861 11091295 ~ 11095664 (-)
CI01000340_11107554_11132757 FRMD4B coding upstream 100061 11107495 ~ 11132757 (-)
CI01000340_11185627_11192539 EEVS coding upstream 176670 11184104 ~ 11192539 (-)
CI01000340_11219006_11225062 NA coding upstream 211140 11218574 ~ 11225062 (-)
G492586 NA non-coding downstream 44374 10959813 ~ 10960064 (-)
G492551 NA non-coding downstream 87771 10915322 ~ 10916667 (-)
G492400 NA non-coding downstream 143738 10860431 ~ 10860700 (-)
G492392 NA non-coding downstream 162768 10841453 ~ 10841670 (-)
G492385 NA non-coding downstream 178018 10826199 ~ 10826420 (-)
G492600 NA non-coding upstream 17498 11024932 ~ 11025149 (-)
G492603 NA non-coding upstream 22030 11029464 ~ 11029680 (-)
G492619 NA non-coding upstream 50848 11058282 ~ 11058772 (-)
G492630 NA non-coding upstream 70202 11077636 ~ 11077841 (-)
G492627 NA non-coding upstream 89220 11096654 ~ 11099325 (-)
CI01000340_10357202_10357606 NA other downstream 642034 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 976455 10025656 ~ 10029589 (-)
G491712 NA other downstream 2204861 8799201 ~ 8799577 (-)
G489511 NA other downstream 4677066 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 4783796 6095704 ~ 6194501 (-)
G493109 NA other upstream 666312 11673746 ~ 11677994 (-)
G493266 NA other upstream 1059743 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 1604782 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 3205914 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 3539565 14546999 ~ 14552983 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033103 lrrn1 coding NC_007117.7 CM002890.2 43076516 ~ 43092175 (-)
bowfin (Amia calva) AMCG00017076 lrrn1,LOC102780565 coding CM030122.1 CM030122.1 43544654 ~ 43546804 (+)