XLOC_013583 (polr2i)


Basic Information

Item Value
gene id XLOC_013583
gene name polr2i
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 40909821 ~ 40913301 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026716
attattttttcagtttgtgctattcaacaagctttttaattaaatacttttggcattgattttgttccataattTCCCTTGTAGAATATAGTGGACAGCATTTGAAATCTGAGGGTGTATTTTTTTCGTATCAAAAGCAACAAACCATATTGGTTATCAATGTAATTTACCAATCCCTATCTCACTAAAGAATAAAGGGTTAgttacaaaaaaactatttaagcTGAAAATATCTCCTACAACACTGAACTCTGACTAGAGTCAGATATTATATGATGTTTGTTGTTTGAAGAGTTTCTTGCATGTATATTTTCTAGACTGCTCTAACTTCTCTCTTCTCTCCCAGTGAACTCACTCAGATTATTGCAGATGTGGCTCAGGATCCAACACTGCCTCGAACAGAGGACCACCCGTGCCCAAAATGTGGCCACAAGGAGGCGGTGTTCTTCCAGTCTCACAGCATGAAGGCTGAGGATGCCATGAGGCTCTACTATGTCTGCACTGCCCCACACTGTGGCCACAGATGGACAGAATGAGGAGGATGAGTTCATAAATGATGAAAAATGAGGTGTTCTGGAGTCCGCGGTCCATTGTTTGTCAGTTTAGAGGACATGTGTTGTTGTCCAGTGGGTGTATCTTGTCAGTGACCTGACTGTAGATCGCTGGAGAATTTGAGACTAAACTGGAGTTTATAATTAATTTTGAGAAACAAACACCAGCCCACATCCAGAGACTCCAGAGAAGTGTTAatagtttttcattttatttcttctgtatttttttaaagatgtttgtaATAAAAGATTACAAAAAGTAAAAGAAA
>TCONS_00026717
TTTCAACGGAGTAGAGACGGATTAATCCTCGTTGTCAGCTCTTAAGCTTTTATTACAAAGTTTCAGCAACCAAATCATGGATCTGGAGGGAGGAAACTATGAACCTGGTTTCGTGGGCATCAGGTTCTGTCAGGAATGTAATAACATGCTGTATCCCAAAGAAGATAAAGAAAACCGCATCCTGCTCTATGCTTGCAGAAACTGTGACTATCAGCAGGAAGCTGACAACAGCTGCATCTATGTGAACAAAATCACCCATGAGGTTGATGAACTCACTCAGATTATTGCAGATGTGGCTCAGGATCCAACACTGCCTCGAACAGAGGACCACCCGTGCCCAAAATGTGGCCACAAGGAGGCGGTGTTCTTCCAGTCTCACAGCATGAAGGCTGAGGATGCCATGAGGCTCTACTATGTCTGCACTGCCCCACACTGTGGCCACAGATGGACAGAATGAGGAGGATGAGTTCATAAATGATGAAAAATGAGGTGTTCTGGAGTCCGCGGTCCATTGTTTGTCAGTTTAGAGGACATGTGTTGTTGTCCAGTGGGTGTATCTTGTCAGTGACCTGACTGTAGATCGCTGGAGAATTTGAGACTAAACTGGAGTTTATAATTAATTTTGAGAAACAAACACCAGCCCACATCCAGAGACTCCAGAGAAGTGTTAatagtttttcattttatttcttctgtatttttttaaagatgtttgtaATAAAAGATTACAAAAAGTAAAAGAAA
>TCONS_00026718
CCAGTCATTTCAACGGAGTAGAGACGGATTAATCCTCGTTGTCAGCTCTTAAGCTTTTATTACAAAGTTTCAGCAACCAAATCATGGATCTGGAGGGAGGAAACTATGAACCTGGTTTCGTGGGCATCAGGTTCTGTCAGGAATGTAATAACATGCTGTATCCCAAAGAAGATAAAGAAAACCGCATCCTGCTCTATGCTtaggaagaaaaacaaataccatgatCAGtggctaccggtttccaacatgcTTCAGAATATCTCCTTTTGCATTCAATAAAGAAGATGAAACTCTCAccagctgagtaaatgatgaaagaccTTTCatatttag

Function

symbol description
polr2i Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; and transcription-coupled nucleotide-excision repair. Predicted to act upstream of or within mRNA cleavage and transcription, DNA-templated. Predicted to be located in nucleolus. Predicted to be part of RNA polymerase II, core complex. Orthologous to human POLR2I (RNA polymerase II subunit I).

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0001193 maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0051168 nuclear export biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006379 mRNA cleavage biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0006403 RNA localization biological_process
GO:0006405 RNA export from nucleus biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0050657 nucleic acid transport biological_process
GO:0050658 RNA transport biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051236 establishment of RNA localization biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0015931 nucleobase-containing compound transport biological_process
GO:0051028 mRNA transport biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0006283 transcription-coupled nucleotide-excision repair biological_process
GO:0008380 RNA splicing biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0000346 transcription export complex cellular_component
GO:0000347 THO complex cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0000445 THO complex part of transcription export complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005730 nucleolus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko04623 Cytosolic DNA-sensing pathway
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03021 Transcription machinery
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-041010-106 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; and transcription-coupled nucleotide-excision repair. Predicted to act upstream of or within mRNA cleavage and transcription, DNA-templated. Predicted to be located in nucleolus. Predicted to be part of RNA polymerase II, core complex. Orthologous to human POLR2I (RNA polymerase II subunit I).

Ensembl:

ensembl_id ENSDARG00000040443

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026716 False 823 lncRNA 0.38 3 40909821 40911375
TCONS_00026717 False 744 mRNA 0.43 6 40909821 40913294
TCONS_00026718 True 333 mRNA 0.40 3 40912306 40913301

Neighbor

gene id symbol gene type direction distance location
XLOC_013582 pglyrp5 coding downstream 3920 40902636 ~ 40905901 (-)
XLOC_013581 foxg1c coding downstream 8114 40900568 ~ 40901707 (-)
XLOC_013580 snrpd2 coding downstream 25734 40875873 ~ 40884087 (-)
XLOC_013579 vaspb coding downstream 53467 40761913 ~ 40856354 (-)
XLOC_013578 akt2 coding downstream 156238 40711188 ~ 40753583 (-)
XLOC_013584 si:ch211-202c21.7 coding upstream 30843 40944144 ~ 40969581 (-)
XLOC_013585 RASA2 coding upstream 184105 41097406 ~ 41164358 (-)
XLOC_013586 zbtb38 coding upstream 285258 41198559 ~ 41219790 (-)
XLOC_013587 fbxo36a coding upstream 313143 41226444 ~ 41232297 (-)
XLOC_013588 NA coding upstream 319013 41232314 ~ 41232928 (-)
XLOC_013384 BX323829.1 misc downstream 21367590 19542102 ~ 19542231 (-)
XLOC_013575 NA non-coding downstream 387297 40521492 ~ 40522524 (-)
XLOC_013574 NA non-coding downstream 394742 40513030 ~ 40515079 (-)
XLOC_013571 NA non-coding downstream 457531 40364311 ~ 40452290 (-)
XLOC_013570 NA non-coding downstream 1050713 39854487 ~ 39859108 (-)
XLOC_013569 NA non-coding downstream 1112986 39791715 ~ 39796835 (-)
XLOC_013589 NA non-coding upstream 430505 41343806 ~ 41344821 (-)
XLOC_013590 NA non-coding upstream 437688 41350989 ~ 41351483 (-)
XLOC_013592 NA non-coding upstream 629241 41542542 ~ 41544182 (-)
XLOC_013598 NA non-coding upstream 1547587 42460888 ~ 42606669 (-)

Expression


Co-expression Network