CI01000340_17053954_17065047


Basic Information

Item Value
gene id CI01000340_17053954_17065047
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 17052377 ~ 17065047 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_17053954_17065047.mRNA
TCAATCTTGAGGTCCCATCTGTCCGACCACAACTGCTACATCCCCCTCATTGCGGTAATGCTACAGCATCAGAAGCTGCACGGATTTCTCCTCAGTGGTTGCTGTGGCAACAGGAGCCAGCGCGAGCTCCGACCGGTGTCCACTGAACTAACGCGTTTGACTTTCTCTTACCGGACGCACATGCGGTGTATACTGCTGTCACTGCTTGAAATGTCATGTCAAGTACTCATTTTGATTAAAAAGAAGGCATTCAAAGGGAAAGTTGGATTGAAAACTTGTCCAATGAGTAATTTTTACGAAAATCCCGACGGTCAAGAAGAACTGGACTTTCCATTACTTTTCTTGTACAACCAACCTGGCAACGACTTACCTCCAGATGACCAAGCTGATGAGTCTGGCGTCCCCTCCAACCATGGCACCAATCAAACTTCCCCATGCATTCATCAAGACCCTTCTCTTTACGGTGAAGAGTCCATTTCCCAGATTTCCCACCATCTCCCTGCCGATGACCTTCTCACTTACGAGCAATCTGATCTCAGACAGTCTCTCGGTCACTCCTCCCTGCTTGCCGCCCACCCTGGAGCCCTCCAAGGCAACAGCCCGAGAATTGAAATCACCTGCCCTGACCTGCACCACCATGACCATGTTCTCACCAACCCTGTAAACATCAATCGGCCCATGCTCACCGTTCCAGGGTACGACATGCCCTACAGGGAGAGCCAATGCCTCAGTCCAGCTAGTAGCACCTCCTCTACTAGCTGGCATTCAGATGGCTATTCTCCAGGAACATACTCACCCTGCATCTCTCCCGGAGGTGGTGAAGGAAGTCTGGTCGGAGTGACTGAAGCCGACCTTTGCCCGATGATGCAGGCCATCCAAGCCTCAGGTTCTCCCAACACGTCCCCTCGCACCAGCATCACAGAAGACACCGTCCTCGACCGCCGCTCATCCTCTCCACGTTCTCGCTCGGCTTCTCCGCAGGGCAAACGCACCTACGTTCAGACTCAAAATCTCCATTTTGGCCGAGACGAGCCCACTGAGTTCTATGCACTGGCAAACTTGGAGGATTCCATAAACAACCTCACCAGCTTGACTAAACCGATCCCTACTAAGATTGTCAGGCCTAATCTAGAGTATTCTGTCTACACGGAAAGCCAGGCGGGCATGTTCCCAACCATGACGGAAGTGAAAAAGGAATTCACTATGGAATCGTGCTATTTCATGCCAGCCAACTGGTCCAGTCAGGCTCTCGCAGGGGTTTGTAGATTCTCATCTCTTAGTATGCCAGTGGCAGCCTTGCCAGCGCTGGACTGGCCTCTCCCCAGCAGCAGTGAGCAGTATGAGCTCAGAATAGAGGTTCAACCCAGACAACATCACCGGGCCCACTACGAGACGGAAGGAAGCCGAGGAGCCGTCAAAGCATCTGCCGGAGGCCATCCTGTCGTTCAGTTGCGAGGGTACACCGGGATGGAGCCTCTGGCTCTACAGGTCTTCATCGGCACGGCTGACGACAGGAACCTCAGACCTCACGCATTCTACCAGGTCCACCGCATCACCGGCAAGACCGTCACCACCAACAGTCAGGAACGAATATTGAGCGGAACCAAAATCCTAGAGGTGCCACTGGAGCCCAAGGAGGACATGAGAGTTGTAGTTGACTGTGCTGGTATCCTGAAACTGAGAAATGCCGACATTGAGCTGAAGAAAGGAGAGACGGATGTCGGACGGAAAAACACACGAGTGAAATTGGTCTTCCGTGTCCACGTTCCTCAACCCGGAGGCCAGTGGCTCTCTCTCCAAGTGGCCTCGCAGACTATTGAGTGCTCTCAAAGGTCGGCCCATGAGCAGCCAGCGGTAGAGCGTCAGGACATGGACCACTGTTCGGTTCTGGGTGGACTGCAGATGATCCTAAGGGGCCAGAACTTCACTTCAGAGTCCAAAGTTATCTTCTTTGAGAAAACGCATGGCACTATCAGCCATCTGTGGAGAAAATTAGCATATGATTTGTTTGAAGTCGTATTGATGTGCTTTGCATATGCTGAGAAAAACGGTGGTCCAGACTGGAGCCATGAAGTTGACTTACAGATATGGGAGGCGGAGGCGAAAGTTTACAGAGACAAAAGCACGTCTAACCTGCTGTTCTTGGAAATCCCTCCATATCGGGACCCCAACATCTATCACCCGGTCAAAGTCAGCTTTCACGTGCTGAATGGGAAGAAGAAATGCAGCCAGCCTCAAAACTTCACCTACACGCCCCTCTCAGTGCCGCAGATTAAAGCAGAGCCGCTTGAAGAATACCAGTACGCACAGTTAGGCTGTACTGTGCGTCCCGTCATGGGCATTTCTCCTCCCTCTTCCCATCTTGCGGACGGTTGTATGATGCCCTCCGGGCCGTCGTACCATCGACCTCAATCTGGCATGTATCCCGCTGTCCCACAACACCACCTCGAGCACGCATCCATTCGCTACCAGGTGCCAGGAATTCTCGCTGGCTCCCCGGGTCATGCTTCGTGTATGGCAACCACACATAGTGCAACCTCGGTGTCTACGTTTGTGTCTAACACCTACCAGCACACCATAGCAGGTGACAGCATCCAAACGGCCGCCTCGTTATTTCCCACCCTTGACGTGTCAGAGCTCTGCTCCGCTGGGGCCTATCAGAAGGCGTACGGCTCAAGGGCGTCCCCAACCACAGGGAGGTCCCCACCGGCCCGCAGCCATCAGCAGACATACCTGCCCGTGCAGCAGCAGAGAAACGTCAGCCCTGTGAGAGTCACCATCAAGCAGGAGAACCTGGATCAGGCCTATCTGGATGATGGTTTGTGGGCATCATTTCTCTGATCTGCTGCGCTTAATTCTGACACTTCAGTTATATTTACAGTCAGGTTCCAGAAGTACAGATCATATTCATTCTCTCATAAGGGAAACTGATTTTTAACAATAACTTATAAACTGATCAAGACAGATCTACTGTGAGCTACGAGATTATTAATTGATGGTATTTGCTTTCAACTTAACACCCGTTCACACCTATAAAGATAACTTTAATGATAACTACATTTGCGTTCACACCAATGAACGATAACGGTCTGTGTATTCTAAGCTCATGCACTGCGTTTTCAAAGTGTGTACAACATGTTTTTGCTGTTCTTGTTGCATTTACACGGCTTTAACCAGCAGATGTCCTCAGCATGCTATGTTTGGAGTGAATAGCTAGTGTAATCGATCTAACAGTGAATTCGAAGTCAATATAGTGGAATAAAAACAACGTCTAGTCTTTTTCACTGCAACTTCAAAGGAAGCAAGACAATGTTGTTGAAACTAGCGCTGGATATCTGAGGTCATTTTATTTTACACTGTTTGCTAACCTGGCATAATGATCTCATCGTTAATACTTCTCACTATTTATTCTGAGGGTATGACCGATTGTTTTCCATATATACATTTTCTATAAAGTATCCTTAAAAACTTGTCAAACAGTGGTGGCTTTTTCTTGGCGATTAACTTCTCCACAATGTCGTCCTCCATTTTAAATGCGCGAGCCCTTAAATTAGAATGGATTCTGATTGGCTGTCAGTGTTTTATCATTCAACAGCTGAAAAAAAAAATAGTTCTAAAAATGATCCCAACAATATCATTTCTCTATATCGTTATCGTTATATCTGTGGTGTGGACAGTGCTATTCTTCTATATTTTGAACTATATCTTTATTGTTATCTTTATAGTTATCGTTCCTGGTGTGAACAGGCTTTTTTTACAGCATAAATTCTGGTGAAAAACTACATTACCCATGATTCTGCAGACAAATCTCCAATCACAGAACTGAAAGAAATCGTGCCAAAAAACAATTTAGTGCTCATCCACTCCCATGAAGCACTGTGAATGACAGAGTCAGTGGTAACACTTTACAAGAAGGTTTCGTTAGTTAACATTAATTAACTACTTTAGTTAACATTAACTAGCAATGAACAATGCTTCTACAGCATTTATTAAACTTAGTTAATGTTAACTTCAACATTTACTAATACATTATTAAAATCAAATCACTTGTAAAGTGTTACCGAGTCAGTGTATATATTAGTAGTTTCTTATTTCAAATTTTTTGTTTTTAATTTGATTGTCTTTTGCAATGCTTCATGGAATTGTAGTTCTTTCATTAAAGCTGTCACACAGTCTTGTACCTTTGTCTTTTTGAATGATTTTCAAATACTTCTTTTGCTTCAAATGATTTGAAAATTTGAATAGCAACATGCTAAAACACTCAGAACACCTTAGCAACTGCAAAGGCAACGTCCTGACAACCACCTACAACATCCAAGTTTTGAACAGGTTCGTTTTCGGACATCAAGATTTTAGTTTATACATTTATATGTGTATATATATTATATTTTTAGGACTGGAGCTGTTTATTTTATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_17053954_17065047.mRNA True 4418 mRNA 0.46 12 17052377 17065047

Neighbor

gene id symbol gene type direction distance location
CI01000340_16864476_16870042 CSRP1, CSRP1A, CSRP1B coding downstream 182335 16864476 ~ 16870042 (-)
CI01000340_16851655_16855749 TNNI1A, TNNI1B, TNNI1 coding downstream 196628 16851411 ~ 16855749 (-)
CI01000340_16835641_16841074 NA coding downstream 211303 16835250 ~ 16841074 (-)
CI01000340_16689196_16692384 NA coding downstream 359042 16689169 ~ 16693335 (-)
CI01000340_16672630_16676596 NA coding downstream 375755 16672555 ~ 16676622 (-)
CI01000340_17078619_17088012 UBE2C coding upstream 13572 17078619 ~ 17088012 (-)
CI01000340_17094196_17104831 PCIF1 coding upstream 28669 17093716 ~ 17106787 (-)
CI01000340_17122774_17130168 CTSA coding upstream 57349 17122396 ~ 17130168 (-)
CI01000340_17146962_17186247 NA coding upstream 81398 17146445 ~ 17186492 (-)
CI01000340_17190713_17213327 NA coding upstream 125350 17190397 ~ 17213476 (-)
G496833 NA non-coding downstream 12731 17033136 ~ 17039646 (-)
G496829 NA non-coding downstream 59058 16993086 ~ 16993319 (-)
G496801 NA non-coding downstream 65843 16968356 ~ 16986534 (-)
G496827 NA non-coding downstream 81209 16970817 ~ 16971168 (-)
G496797 NA non-coding downstream 86072 16928391 ~ 16966305 (-)
G496854 NA non-coding upstream 133286 17198333 ~ 17199818 (-)
G496863 NA non-coding upstream 193637 17258684 ~ 17259144 (-)
G496925 NA non-coding upstream 405147 17470194 ~ 17470651 (-)
G496930 NA non-coding upstream 406510 17471557 ~ 17471761 (-)
G496932 NA non-coding upstream 424590 17489637 ~ 17489846 (-)
G496845 NA other downstream 6689 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 532403 16514899 ~ 16518531 (-)
CI01000340_16175837_16177624 NA other downstream 872292 16171677 ~ 16178314 (-)
G495475 NA other downstream 1439814 15606741 ~ 15612563 (-)
G494872 NA other downstream 2493354 14557623 ~ 14559023 (-)
G496853 NA other upstream 112445 17177492 ~ 17242739 (-)
CI01000340_18419431_18419838 NA other upstream 1354271 18419058 ~ 18421201 (-)
G497442 NA other upstream 2093822 19158869 ~ 19166778 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033229 nfatc2b coding NC_007117.7 CM002890.2 55221490 ~ 55254786 (-)