G488259


Basic Information

Item Value
gene id G488259
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2658651 ~ 2751966 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU560192
TTTGGTAATAAGACACTTTTATTGATTTTACTGATTTGGACCGACATGCTAGATTTCTATACAGTGTGAATGGTAAAGCTAGCTCTGAATCAATCAGGCTGGCTCCACTGAGCTAAAACATATACACAGGGAATGGTTGCACCCTTAAAAGCATTAACTCAACTCACGCACAGACATTCACCCAAGGCTGATGTAGCGTTGTGTCAATCACAATGACTACTGGTATTACAGGTACACTGATGATATGATTCCATACAGGGAGCATGTCTGCACCCTATTCAATTCAAATGAGAACTTCTTTTCAGAAGTGAAGAAAACAAAACGTTAACAAAACTTCATAAATCATTAATCAACCCCCATCCAGCTTATGCTAAGTGACGTCCTTCTGCACCTCTCTGTGATCTGAGAAGGCATTGGCACAGACAAATCTGATTTTCCCTTTAAATCTCCAGACTATCCATAAGCAGGAAGCAAAGGTTTTAATGAGTCAGTGCTGAATGATTCAGTCAATTACAGTGTAGTTTACCATATTCCAAATAAAAGCTGCTGGATTTAATAAGAATAAACTGGCATTTTAACATTTTTATTGTTTTCTGATTCTTATGTCATGTGCTCATTCTCATTTCCTATGCATCACAAATAGCTAGACATGACTTGTGTCTGGCGGTATGTGAATCAACTTTACAAATAGGTTATCTGTACAGTGACCCTCGAGAGATTTACGCTACAGTTTGAACTCTAAAGTGGTTTCAAGGACAGACATTTGACAGCAATTTTGAAACATTTACAACTTTCTTTCTTGAAAAAGTGCATTAAGGATTCACATGAAATACAATTCAAATAAACTGATATACTACACAATGTGTCTCCCCCCTGGTCAGTGCACTACAATTTACTGGCCCAAAGAGCAGCTGTAGACATGAGTGGGTTCCTACACAAGGCAAACACTATAATGCTGCATAATGCTAATTCTTTAAAGTGAACTATAGTTATTTTCAGAGGAACGTCCCATCTTTGCATTTCTGATATTAAAGCCTGTTTGAAAATGACAGCTGATATATTTACAATAGAATTGGACTGTTTGATCAATCAGCGTGCAAACAAATTATTCCAATCAATTAAATATGAATGACCAAGTTTAGTTGTGCATGATTTGCTCCTCTGTCACGTTCATAGTCTTGTGACTATCTGCAGTACGCTATAAATGACTGACAAACATTCTACAGAAGAAAGCGGATCCTTCCTTGTTATCAGGTTGTTTGCACAAGCTGTTTGCTTTTAGTGCGAACGGGAAATTATAAAGAAAAGAAATGCTGGAAACATTAAATAAACTGTGTAATTAAAACTTGAACTGTACATAAACAATAAAAAAAATCACACAGAATGTGGCAAGGTTTCAGGAGATCTGCAATGACACGTTCACAAACACACATAAACAAAAACCTGTCCTGACACTTAAAATAACAAGTTCTGTGTCACAGCAAGAAAAAAAAGAGGCTAAAATAAGTTGATTTAATGAAGTGCGTTGAGTCACAAAAACTTGTGCACGGTAGCCAGCAGGATTGAGATGATACTTTTAAAAATGGCTAACATGCATGTTTGCTGTATTTTCTGGGTTATCCGTTGTTTGAATTTCCTTCTTGCTTATGAACTCTTTGCTCTAATCCTGCTTTTTATGGCAAAATTATAATTTCTTGTCTGCATCTGTTTTAGTGCTCATCCTTGTATACAAAAATACAAAACAAAGAAAAAAAATCTACGTCTCTACATTTTCAAAAAGTATACATGTTGGACATAGTTGACATTTTTATTGATTTTTGCCCTTCACTTTTCGAATTTTTAGGATTTTTGGCAATTTTGTTACTAAAGTATAGGTACTATTTTACAATTGAAACTGATGTAACACTGATACCAACCAGTTACTAAAAGTCAGATGGGAAGGCCAAATATCCAATCTGAAAACACAACTGGAAGCCAACCAAAAGGAAGCAACACAACAAGCATGTGGTGTGTAGATGATGCTGTAAATCAGATGTGAGCTATTAACAGGAACATCCGCCCTCAGTAGTTGGAGGTTCCTGTGGTTTGTCCAGTTTAATGTCAATCATGCCCTCTTTGCTTGTCTCCTGCATGCTCTCCATTCCTGGAAGGGCAGCTGCCACACGTCGAAACAGCTGTTTGACGTTGTAGCCCGTCTTGGCACTGGTCTCGATAAACATCACACTCAGCTCTTTGGCCCGCTGCTCGCCTTCTTCAATCGTGATTTGCCTCTTATCTGCCAGATCTGTTTTGTTGCCCACCAGCATGATGATGACATCACTTCCTCTCTCCGTTCTCACATCATCGATCCATTTGGAAGTTTGTTGGAATGAATTCACATTTGTGATGTCATACACCACCACAGCTACAGTGGAGTCTCTTATATAGCTTGGGATAAGGCTCCTAAAACGTTCCTGGCCTGCCGTGTCCCACAACTGCAACCGAACCGTTCTGTCCTCCAAATACATGGTTTTTGACAGGAAGTCGATTCCAATTGTCGCCTGATATGTGTTGTCAAAGCTGTCGTACATGAAGCGTGTGATCAGGGAAGTCTTCCCCACGCTTTGCTCTCCAAGAAAGACGAGTTTGAATTTCCTTAAAGGGTTTCCAAAGTCATTTCCCACAGACATGTTTGAGGGCTTGTTTTTTTAACAGCGTGTTCCCACCGGTGTAAATGTCTGGATGGGGCAGCGCGATGGAAAAAACGGCGCTCCTGTGCGTTTGGAAACGGGAATGCTGCACTGGTTCGGCTGTCAGGCTTAATAGCTGCTGCGCA
>TU560193
TTTGGTAATAAGACACTTTTATTGATTTTACTGATTTGGACCGACATGCTAGATTTCTATACAGTGTGAATGGTAAAGCTAGCTCTGAATCAATCAGGCTGGCTCCACTGAGCTAAAACATATACACAGGGAATGGTTGCACCCTTAAAAGCATTAACTCAACTCACGCACAGACATTCACCCAAGGCTGATGTAGCGTTGTGTCAATCACAATGACTACTGGTATTACAGGTACACTGATGATATGATTCCATACAGGGAGCATGTCTGCACCCTATTCAATTCAAATGAGAACTTCTTTTCAGAAGTGAAGAAAACAAAACGTTAACAAAACTTCATAAATCATTAATCAACCCCCATCCAGCTTATGCTAAGTGACGTCCTTCTGCACCTCTCTGTGATCTGAGAAGGCATTGGCACAGACAAATCTGATTTTCCCTTTAAATCTCCAGACTATCCATAAGCAGGAAGCAAAGGTTTTAATGAGTCAGTGCTGAATGATTCAGTCAATTACAGTGTAGTTTACCATATTCCAAATAAAAGCTGCTGGATTTAATAAGAATAAACTGGCATTTTAACATTTTTATTGTTTTCTGATTCTTATGTCATGTGCTCATTCTCATTTCCTATGCATCACAAATAGCTAGACATGACTTGTGTCTGGCGGTATGTGAATCAACTTTACAAATAGGTTATCTGTACAGTGACCCTCGAGAGATTTACGCTACAGTTTGAACTCTAAAGTGGTTTCAAGGACAGACATTTGACAGCAATTTTGAAACATTTACAACTTTCTTTCTTGAAAAAGTGCATTAAGGATTCACATGAAATACAATTCAAATAAACTGATATACTACACAATGTGTCTCCCCCCTGGTCAGTGCACTACAATTTACTGGCCCAAAGAGCAGCTGTAGACATGAGTGGGTTCCTACACAAGGCAAACACTATAATGCTGCATAATGCTAATTCTTTAAAGTGAACTATAGTTATTTTCAGAGGAACGTCCCATCTTTGCATTTCTGATATTAAAGCCTGTTTGAAAATGACAGCTGATATATTTACAATAGAATTGGACTGTTTGATCAATCAGCGTGCAAACAAATTATTCCAATCAATTAAATATGAATGACCAAGTTTAGTTGTGCATGATTTGCTCCTCTGTCACGTTCATAGTCTTGTGACTATCTGCAGTACGCTATAAATGACTGACAAACATTCTACAGAAGAAAGCGGATCCTTCCTTGTTATCAGGTTGTTTGCACAAGCTGTTTGCTTTTAGTGCGAACGGGAAATTATAAAGAAAAGAAATGCTGGAAACATTAAATAAACTGTGTAATTAAAACTTGAACTGTACATAAACAATAAAAAAAATCACACAGAATGTGGCAAGGTTTCAGGAGATCTGCAATGACACGTTCACAAACACACATAAACAAAAACCTGTCCTGACACTTAAAATAACAAGTTCTGTGTCACAGCAAGAAAAAAAAGAGGCTAAAATAAGTTGATTTAATGAAGTGCGTTGAGTCACAAAAACTTGTGCACGGTAGCCAGCAGGATTGAGATGATACTTTTAAAAATGGCTAACATGCATGTTTGCTGTATTTTCTGGGTTATCCGTTGTTTGAATTTCCTTCTTGCTTATGAACTCTTTGCTCTAATCCTGCTTTTTATGGCAAAATTATAATTTCTTGTCTGCATCTGTTTTAGTGCTCATCCTTGTATACAAAAATACAAAACAAAGAAAAAAAATCTACGTCTCTACATTTTCAAAAAGTATACATGTTGGACATAGTTGACATTTTTATTGATTTTTGCCCTTCACTTTTCGAATTTTTAGGATTTTTGGCAATTTTGTTACTAAAGTATAGGTACTATTTTACAATTGAAACTGATGTAACACTGATACCAACCAGTTACTAAAAGTCAGATGGGAAGGCCAAATATCCAATCTGAAAACACAACTGGAAGCCAACCAAAAGGAAGCAACACAACAAGCATGTGGTGTGTAGATGATGCTGTAAATCAGATGTGAGCTATTAACAGGAACATCCGCCCTCAGTAGTTGGAGGTTCCTGTGGTTTGTCCAGTTTAATGTCAATCATGCCCTCTTTGCTTGTCTCCTGCATGCTCTCCATTCCTGGAAGGGCAGCTGCCACACGTCGAAACAGCTGTTTGACGTTGTAGCCCGTCTTGGCACTGGTCTCGATAAACATCACACTCAGCTCTTTGGCCCGCTGCTCGCCTTCTTCAATCGTGATTTGCCTGTGAAAAGGTTGAACATTTGAATCCATTTATTTAAGTTAAATAAGTTTATTTATAAAATATTACTGCACTGTGATGACCACTTCTGAAAAAAACATGAATTTCCATGCTGGTTTAGTGCTGGTCTGGATGCTGGACCAGCATAGCCATACTGATCAGCAGCAAAAAACTTATGGTCAACCGACAGTCTTTCTGGTAAAGCTGGTTGACAAAGGTGATCTTGCTGGTTAAGCTAATTAGGAAAAATACTTTTTGTGCGCCAAAAAAAGACTTTATTCAACAATTTTGCCCACCAATGGTGAACCACTGAAATCACGTGACTTTCACGCTCCAAACCACTGATTCGAAACAAAAGATTCGTAAAGCTTCGGAGATTCATGAAGCAGTTTTAAAATCGCCCATCACTAGAAATTGTTGAATAAAGTCATTATTTTGTTTTTTTGGCACACAAAAAGTATTCTTGTCGCTTCATAACATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTTAATAGTACCTTTAGTACCTTTCTGGGCATTGAAAGTGGAAATTACTTGTTGTCAATGGAGTTACTAAGCTAAGCTACGCTACTGGATTTTATCAAAAATATCTTAAAGGGTTAGTTCACCCAAAAATGAAATTAATTGAAAATTATGTCATTTATTACTCACCCTCATGTTGTTCTACACCCGTAAGACCTTCGTTCATCAGATATTTTTGATGAAATCCAAAGGCTCAGTGAGGCCTCTATTGCCAGCAATGTCACTGAACTTCGGAGTTCGGAGCGCCAAAGTCACGTGATTTCAGTAAACAAGACTTTGTTTACGCGATCCGAACCACTGATTCGAAACAAAAGATTCGTAAAGCTTCGAAGCAGTGTTTTGAAATCGTCCATTACTAGATATTGTTGAAAAGTCGTTATTTTGTTTTTTTGGTGCAAAAAAAGTATTCTCGTCACTTTATAATATTAAGGTTGAACCACTGTAGCCACATGATCTGTTTTAAATATGTCTTTAGAACCTTTCTGGATCGTGAGAGGTTCAGTGACATTGCTGGCAATAGAGCAAGTAATAAATGACATAATTTTCATTTTTAGGTAAACTAACCTTTTAAGATAAATGGGGATGGGCTAAAAGATACTTTCTCCAGACATCCACGGTGGGGACATTAGAATCAAAAACACACTTCCTGGTGACCAGCTATACTGGTCTTGGCCGGAGGGGTACCATAAAGAACAATAGCAAAGAAACAGAGGCCACATATGAAGGCAAATAATCCTTCTGCCAGTAATGTCAACCAATTTCACGAGACAGTCCAGCCTTTATAGTAGCCCAACAAGATTTATGAAAACAGCAATAATGGAAATATGGTATTTGATAAAGTGGTTAGTGGGTCACAGATTATGGGTGAAGTATTATCAGACAGCACAGGCTCTGAGACAACAGCATCAGTCATTGCCTCCCTCCCTCATATCTACTAACTCTAATTAATTGATGTTGAAACTGATTAATTGCACAGAGGGAAGGCCCATTAATTAAGCCTCATTTGTATGACACACTTGTGACAATCATCCATGTCTGTGGCTCCGAAGCATGTTTGTGTACGTATGTGACAGAGTTTGTGAGGTGGTTGAGAGAAATGAGTAGGCTGAAGAGGAGACTAGCTGTATCTCAGAGCAGTGGGACGTGAATAGGACATGCTGTATTTAAGCCACTGAGCTCTGTCTGCTGGGACAGCCATGATGTAACCACCTAAACTCTTTTGTTCTCTCCACAGACAGGAGCTCAGAGACATAAGTGAGTTTATTTAACTCGTGAATTGCATTCCTGGTTCACCGCTTCTCAAAATACACAGCACATTCTCTGTAAATGGTGCCATTTCTGCCCCCAAGACATATAATTACAATGAAACTTAATTACATTATTTGATTAGATTTAATGCTATTTAGTATGTCATTCAAAAAGTAAATTATAAAATAATACTAAAATGTTGTAATTGTTTTTCATCCGATTATGAGCTATTTTGCATAATCCCACTGATCAACATTATAGTTTACATTTACATTATAAAAAAAAATCTATTTCAAATAAATGTTGTTCTTTCGAACTTTCTATTCATCAAAGAATCCTGAAAAGAAATGTATCAGTTTCCACACAAATATTAAGCAGCAAAACTGTTTTCAACACTGATAATAATAAAAAATGTTTCTTGAGCAGCAAATCAGCATATTAGAATGATATCTGAAGGATCATGTGACACTGAAGACTAATGATGCTGAAAATTCAGATTTGCCATCAAAGGAATAAATGACATTTTAAAATATATTAAAACAGTTATTTTAAATTGTAATAATATTTCATAACATTTTAAGAATTGTGTGTGATATTAAATATATCACACAGACTTAATGTATAATACTTTAAGAATCAGAATCTCTCACGCGCACACACACACACGAGGACTTGTCCTCATATTTCATGTTTACGTCGTAATACCAGTGTAATACCCATGTCATTATACAAATTTGTGTCCTCATAAATCACAAAAACGCACACAAACACACGCACACACACATAAAATACATGTCAGCATGCCGTCTGTCCACGCCACCGCCTTTTTTTTCCCCCCAAAGCTACTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU560192 False 2815 lncRNA 0.39 8 2658651 2751966
TU560193 True 4909 lncRNA 0.37 3 2733642 2751966

Neighbor

gene id symbol gene type direction distance location
CI01000340_02567081_02567521 NA coding downstream 91008 2566737 ~ 2567643 (-)
CI01000340_02341068_02348409 NA coding downstream 310174 2340503 ~ 2348477 (-)
CI01000340_02333476_02337529 AGXTA coding downstream 321122 2333102 ~ 2337529 (-)
CI01000340_02329631_02332000 DTYMK coding downstream 326651 2329606 ~ 2332000 (-)
CI01000340_02293072_02301920 STK25B, STK25, STK25A coding downstream 355704 2293014 ~ 2302947 (-)
CI01000340_02936853_02939837 BCL6A, BCL6 coding upstream 183671 2935637 ~ 2939837 (-)
CI01000340_03342324_03363204 TOMM70, TOMM70A coding upstream 590335 3342301 ~ 3363619 (-)
CI01000340_03379959_03401892 GFI1AB, GFI1 coding upstream 627320 3379286 ~ 3401952 (-)
CI01000340_03403238_03403692 NA coding upstream 651257 3403223 ~ 3403692 (-)
CI01000340_03406706_03449487 EVI5 coding upstream 654508 3406474 ~ 3449487 (-)
G488251 NA non-coding downstream 3996 2648354 ~ 2654655 (-)
G488247 NA non-coding downstream 24834 2633573 ~ 2633817 (-)
G488207 NA non-coding downstream 100184 2554516 ~ 2558467 (-)
G488201 NA non-coding downstream 139092 2518832 ~ 2519559 (-)
G488197 NA non-coding downstream 143347 2515103 ~ 2515304 (-)
G488306 NA non-coding upstream 15202 2767168 ~ 2773417 (-)
G488303 NA non-coding upstream 26612 2778578 ~ 2780461 (-)
G488302 NA non-coding upstream 29547 2781513 ~ 2783739 (-)
G488304 NA non-coding upstream 33701 2785667 ~ 2786091 (-)
G488325 NA non-coding upstream 54047 2806013 ~ 2806242 (-)
G487884 NA other downstream 756379 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 1867242 786551 ~ 791409 (-)
G485786 NA other downstream 2332935 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 2576556 62780 ~ 82095 (-)
G488782 NA other upstream 1253839 4005805 ~ 4006448 (-)
G488862 NA other upstream 1755230 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 1848254 4598714 ~ 4627447 (-)
CI01000340_05321995_05329778 ATG4C other upstream 2568787 5320753 ~ 5330215 (-)
CI01000340_06095704_06194498 MAST2 other upstream 3431324 6095704 ~ 6194501 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 misc CM030126.1 CM030126.1 28928892 ~ 29011768 (+)