XLOC_013962 (rab42a)


Basic Information

Item Value
gene id XLOC_013962
gene name rab42a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 16032383 ~ 16036147 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027878
TCTTCTCTCCTCTCCGCTCCATACTGCCCAATGTAAACACCGTTAGCGCTCCTGCTTTGTCTTTGAGTCTGTGGCTGGAGCTTTTGACTCGCCATGCCATGGATACTTTATGGCAGTACCAGTTCAGGATAATTTTACTCGGGGACTCGACGGTGGGCAAATCATCTTTGCTCAAGAGGTTCACGGATGGCATATACAGCGATGTAGCGGATCCGACGGTCGGTGTGGATTTCTACGCCCGTTCAATAGACATCGAACCTGGGGTTAAAATCAAACTACAGTTATGGGATACAGCCGGACAGGAGAGATTCAGGTCTATCACCACTTCCTACTATCGCAACTCTGTGGGCGGTCTCTTAGTTTTTGATCTGACGAACAGGAAGACCTTTGATCATGTGCGGGAATGGCACCGAGAAGTCAGCGAGCACATCCTGCCTCATCACATGGTCTACATCCTGATCGGCCACAAGAGCGACCTGAGCCGCGATCGCAAGGTGACACGAGATGAGGCCGAGCAGCTAGCGGCCGATCTCGGAATCCGCTATGTGGAAACATCAGCCAAATGCAACAGCAATGTGGAACGTGCTTTCGAGCTGCTCACACGGGACATTTATGAGCTGATGAAGATGGGTGAGATCTCCACTCGTGACGGCTGGGATGGGGTCAAGAGTGGCCTCACTGCCAAAGTTCTTTATCCAGCTGAGGAGGAAGCGGAGCGAGAAAAGAGCTGCAACTGCTGACTTCCACAATCCACCTGTAATTGCACCTGTGTTTCAGTTGGTCGTCGCTCACCTTGGCTTTCACCAGTGTGTCGCATCATGGTCACTGCCTCAGGGCCTGGACCGCTGCACGTACCTTCTTGTTGATGTTTGAGGTTGATGGTATAAGCCACTCAAAGGTGTAGTATATGTGGGCTTGAATGGTCCTCTTCATATTGTTGGAGATCACCCTATGTTTTCAAGTCTTGTGGATAAcatggataaacattttttaagctCTATCCCATTGTACTTCACATCCTCTGGAGTTTAGTCTTCTTTCTTTCCCTTTTAACATTATTACTGTGGTACAGTTAACgtctaaaaaaaaa

Function

symbol description
rab42a Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within Rab protein signal transduction and autophagy. Predicted to be located in plasma membrane. Predicted to be active in Golgi membrane. Orthologous to human RAB42 (RAB42, member RAS oncogene family).

GO:

id name namespace
GO:0032482 Rab protein signal transduction biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1983 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within Rab protein signal transduction and autophagy. Predicted to be located in plasma membrane. Predicted to be active in Golgi membrane. Orthologous to human RAB42 (RAB42, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000034215

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027878 True 1090 mRNA 0.49 2 16032383 16036147

Neighbor

gene id symbol gene type direction distance location
XLOC_013961 ctps1a coding upstream 880 16015881 ~ 16031503 (+)
XLOC_013960 foxo6b coding upstream 411416 15571290 ~ 15620967 (+)
XLOC_013959 ppp1r8a coding upstream 499868 15521997 ~ 15532515 (+)
XLOC_013958 pdik1l coding upstream 513509 15485287 ~ 15518874 (+)
XLOC_013957 lin28a coding upstream 559226 15440841 ~ 15473157 (+)
XLOC_013963 snrnau11 coding downstream 25679 16061826 ~ 16061961 (+)
XLOC_013964 gmeb1 coding downstream 28292 16064439 ~ 16089187 (+)
XLOC_013965 CR385068.4 coding downstream 32823 16068970 ~ 16069103 (+)
XLOC_013966 ptprua coding downstream 186471 16222618 ~ 16657563 (+)
XLOC_013967 NA coding downstream 675679 16711826 ~ 16712299 (+)
XLOC_013956 NA non-coding upstream 728550 15301688 ~ 15303833 (+)
XLOC_013955 NA non-coding upstream 1005041 15025916 ~ 15027342 (+)
XLOC_013953 NA non-coding upstream 1161152 14850817 ~ 14871231 (+)
XLOC_013944 BX530067.1 non-coding upstream 2198390 13833879 ~ 13833993 (+)
XLOC_013943 NA non-coding upstream 2226510 13796592 ~ 13805873 (+)
XLOC_013968 CR318590.2 non-coding downstream 871562 16907709 ~ 16909487 (+)
XLOC_013970 NA non-coding downstream 1317493 17353640 ~ 17354668 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000320_02625602_02629500 RAB42A, RB39B, RAB42 coding CI01000320 null 2625304 ~ 2631561 (+)