G520420


Basic Information

Item Value
gene id G520420
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000365
NCBI id null
chromosome length 458031
location 242506 ~ 324746 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU597047
TGTGTTCGTCACTCACGCTCTCGTATTGCTTCACGTTCTGGAGAGCTGCGTGTGCCGTCAGGGTGAAGTGAACTTCTGAAGATTTCTGCAGATCAAACTGACCACACTCAAACTTCCCGCAGTGACCGTCCTGAAACACCAACACAACACTGAGAACTGAAACACTGACAACAATAAACCAGAGAATCAAATGAACTAAACAGAGATGAAATCTGTTGTGTCTTTGGGCTCCAATATTGTTTGAACACCAGTGTTTTTCTCAAAACATCTCTGCTGTGTTCAACAGAAGAAAGAAAGTCATACAGGTTTGAATGACAAGAGAGTGAGTAATGATGACAGAATGATCATGTTTTGATGAACGATCTCTTTAACAGCTTGTAAATGGGTCTATGATCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU597047 True 396 lncRNA 0.41 2 242506 324746

Neighbor

gene id symbol gene type direction distance location
CI01000365_00215623_00216039 NA coding downstream 24117 214868 ~ 218389 (-)
CI01000365_00102657_00113817 NA coding downstream 128514 102430 ~ 113992 (-)
CI01000365_00096865_00101128 ZBTB45 coding downstream 140322 96541 ~ 102184 (-)
CI01000365_00040221_00045449 CDC37 coding downstream 197057 39830 ~ 45449 (-)
CI01000365_00326334_00327173 NA coding upstream 1329 326075 ~ 327600 (-)
CI01000365_00436141_00445601 NA coding upstream 110692 435438 ~ 445601 (-)
G520429 NA non-coding downstream 112475 126197 ~ 130031 (-)
G520391 NA non-coding downstream 164213 77490 ~ 78293 (-)
G520393 NA non-coding downstream 167767 74399 ~ 74739 (-)
G520395 NA non-coding downstream 170747 71445 ~ 71759 (-)
G520405 NA non-coding downstream 213617 28672 ~ 28889 (-)
G520565 NA non-coding upstream 69783 394529 ~ 398108 (-)
G520569 NA non-coding upstream 80955 405701 ~ 410085 (-)
G520573 NA non-coding upstream 92003 416749 ~ 418336 (-)
G520557 NA other upstream 51419 376165 ~ 377658 (-)

Expression


Co-expression Network