G520418


Basic Information

Item Value
gene id G520418
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000365
NCBI id null
chromosome length 458031
location 291733 ~ 292900 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU597045
CATTAGCCACAGTTCTGAGAGCATTCCCTGTTAGTTGGGGTGTTTGAGATTGAGGGAACTAAAGCAAACTCTCACCTGAGCGTGGTCGGGGTTTATTCCATGTGTCCTGTCACCCAGGTAGATGTAGACGACTCCCTCTCCTTCATTCTCAAGCGGCGCCCCGACTGCCACATCTGACAGGCCGTCTCCATTCAGGTCCTTTAGTGAAGCCAAAGATGCTGCAAATCTGCCTGTGTTTGACTCACTCACATTCAGTGTCTTCTGCAAATCTCCTCTGATACAGCGTAGACGTACAGCCTCCCTTCTGCCCTCGGCTGAGACTGATAAAATAACGGAGCTCCGACCAGAAGGAAATCTGATTCTCCATCCGAGTCCAGATCCAACACACTCAGAGACGCTCCGAAATATGACCCGATCTGATGACAAAAATCAATCAAATCGAATGTAATTGTATACTAGCATAAGCTATGTGTAGTCTGTTCACTGAAAAAAGAATTATGAAAACATTTTCTGCTTTACCAAGGCAAAGGTCAATATAGTAATTATTTTTCTTTTTCCCAGTTGGAGATGGCATTGCAGGGCCCATATTATAAGTGTAATGCTTGTTTGTTTGGGTTTTTTTGTGAAATGCTAAACCTCATGAGAGTGTGTCTTATTGGGTGGACTGTAGGATTTGGGAAGCTCTGCTCTCACCAGTGCAGAGTGTTAATATCAAGTCAAAGGGTTCTTCTTCACTAACTTGTTCTCCGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU597045 True 751 lncRNA 0.44 2 291733 292900

Neighbor

gene id symbol gene type direction distance location
CI01000365_00215623_00216039 NA coding downstream 73344 214868 ~ 218389 (-)
CI01000365_00102657_00113817 NA coding downstream 177741 102430 ~ 113992 (-)
CI01000365_00096865_00101128 ZBTB45 coding downstream 189549 96541 ~ 102184 (-)
CI01000365_00040221_00045449 CDC37 coding downstream 246284 39830 ~ 45449 (-)
CI01000365_00326334_00327173 NA coding upstream 33175 326075 ~ 327600 (-)
CI01000365_00436141_00445601 NA coding upstream 142538 435438 ~ 445601 (-)
G520491 NA non-coding downstream 82 273825 ~ 291651 (-)
G520417 NA non-coding downstream 47590 123859 ~ 244143 (-)
G520429 NA non-coding downstream 161702 126197 ~ 130031 (-)
G520391 NA non-coding downstream 213440 77490 ~ 78293 (-)
G520393 NA non-coding downstream 216994 74399 ~ 74739 (-)
G520565 NA non-coding upstream 101629 394529 ~ 398108 (-)
G520569 NA non-coding upstream 112801 405701 ~ 410085 (-)
G520573 NA non-coding upstream 123849 416749 ~ 418336 (-)
G520557 NA other upstream 83265 376165 ~ 377658 (-)

Expression


Co-expression Network