CI01000367_00171001_00186824 (TGFBR1)


Basic Information

Item Value
gene id CI01000367_00171001_00186824
gene name TGFBR1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000367
NCBI id null
chromosome length 357953
location 170842 ~ 187231 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000367_00171001_00186824.mRNA
ACACTCACAGTGTTCATGGGCCTTGTTTTCATGATGAGCAGGCATCGAGTTTTCACACCAGAACCTCAGTAGATGCAAACATTTCACCTGTAAGTGTGAAAGTGAAAGTGACGTGAAGGCCAAGTATGGTAACCCATACTCAGAATTTGTCCTCTGCATTTAACCCATCCAAGTTAGTGCACACACATTAGGAATAATGAGTAGTGAACACCACACGCATTGCACACCGTGGACACACATACCAGGAGCAGTGGGCAGCCGTTTTGCTGTGGTGCCCTGGGAACGGTTAGGGGTTAGTTGCCTTGCACAAGGGCACCTCAGTCATTTCCTGCCGGTATTGATAATCGAACATGCAACCTTTATATTACCAGTATGACTCTCTGACCATTAGGACACAACAGTCTCAAATGAGTATTGATGAGGCGCCAGATGAGTATCGACGAGGCAAAGCCCTCTCAACTGTCACAAACTGCCTCCACAGCAGCCCCCAGGAGGAAGGATTGCCCCTGTTGGTCCAGAGAACAATTGCTCGAACCATTGTCCTCCAGGAGAGCATTGGGAAGGGGCGCTTCGGGGAAGTGTGGAGGGGCAAATGGAGGGGGGAGGATGTCGCTGTGAAGATCTTCTCCTCGCGAGATGAGCGCTCCTGGTTTCGTGAGGCTGAGATTTATCAGACTATCATGTTACGCCATGAGAATATTTTGGGGTTTATCGCCGCTGATAACAAAGATAATGGCTCATGGACACAGCTGTGGCTGGTGTCTGAGTATCATGAGCATGGGTCTCTCTTTGATTACCTGAACAGATACACAGTATCAGTGGAGGGAGTCATAGTTCTGGCGCTGTCCATCTCCAGCGGCATCGCACACCTGCACATGGAGATAATTGGCACTCAAGGGAAGCCCGCCATTGCTCACAGAGACATAAAGTCAAAGAACATCCTGGTTAAGAAGAACGGAACTGCTGTGATTGCTGATCTTGGTCTGGCTGTCAAACACGACTCTAATACCAACACCATTGATATCCCCATTAACCACAGAGTGGGCACCAAGAGGTGTATGAAGACTCTTGATGGAGGTACATGGCTCCTGAGATCCTGGATGATTCCATAAACATGAGCAGCTTTGAGTCATTTAAGCGTGCTGATATCTACTCACTTGGCCTGGTGTTCTGGGAACTTGCTCGCAGATGTTCTGTCCAAGGTGTCCTTCTAGCCTATTTAAAGTCAAGTTTAAAAAAAAAAAAAAAAACAGTGATCAGATCCCAATAAA

Function

symbol description
tgfbr1 Enables several functions, including ATP binding activity; I-SMAD binding activity; and transforming growth factor beta receptor activity, type I. Contributes to transforming growth factor beta binding activity. Involved in several processes, including positive regulation of macromolecule metabolic process; positive regulation of signal transduction; and protein phosphorylation. Located in several cellular components, including bicellular tight junction; endosome; and membrane raft. Part of receptor complex. Implicated in Ferguson-Smith tumor; Loeys-Dietz syndrome 1; Lynch syndrome; and urinary bladder cancer.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000367_00171001_00186824.mRNA True 1271 mRNA 0.48 6 170842 187231

Neighbor

gene id symbol gene type direction distance location
CI01000367_00131770_00138127 CYTIP coding downstream 32468 130275 ~ 138374 (-)
CI01000367_00251966_00286991 ACVR1 coding upstream 64735 251966 ~ 286991 (-)
CI01000367_00297558_00307790 NA coding upstream 109914 297145 ~ 307790 (-)
G521134 NA non-coding downstream 63809 106823 ~ 107033 (-)
G521130 NA non-coding downstream 99633 70779 ~ 71209 (-)
G521126 NA non-coding downstream 106900 63737 ~ 63942 (-)
G521125 NA non-coding downstream 108210 62414 ~ 62632 (-)
G521209 NA non-coding upstream 140390 327621 ~ 327821 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037605 ACVR1C coding NC_007120.7 CM002893.2 5271524 ~ 5318873 (-)