Fish Transcriptome and Expression Database

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model fish

XLOC_014090 (FP017254.1)

Basic Information

Item	Value
gene id	XLOC_014090
gene name	FP017254.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007130.7
NCBI id	CM002903.2
chromosome length	48449771
location	26576594 ~ 26576708 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028077
TTTTACCCCCATGTTAGAGCTAGCTCACTCaagtcgcccactgaagctaagcagggatcTGCCCGGTCaaaacctggatgggagaccacatgggaaaacaagGTTGCTGCAGAAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000114729

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00028077	True	115	rRNA	0.52	1	26576594	26576708

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_014088	mylipa	coding	upstream	197939	26340736 ~ 26378655 (+)
XLOC_014087	BX842609.1	coding	upstream	383658	26192822 ~ 26192936 (+)
XLOC_014086	jarid2b	coding	upstream	420063	25971000 ~ 26156531 (+)
XLOC_014085	tac1	coding	upstream	923409	25649626 ~ 25653185 (+)
XLOC_014084	sdhaf3	coding	upstream	1027964	25526354 ~ 25548630 (+)
XLOC_014091	ints3	coding	downstream	63388	26640096 ~ 26673855 (+)
XLOC_014092	si:dkey-27c15.3	coding	downstream	105140	26681848 ~ 26730250 (+)
XLOC_014093	FP085398.3	coding	downstream	229058	26805766 ~ 26805882 (+)
XLOC_014094	FP085398.1	coding	downstream	251794	26828502 ~ 26844582 (+)
XLOC_014095	nelfe	coding	downstream	346072	26922780 ~ 26932829 (+)
XLOC_014081	CR855860.3	non-coding	upstream	1401202	25175272 ~ 25175392 (+)
XLOC_014079	CR855860.2	non-coding	upstream	1424017	25151416 ~ 25152577 (+)
XLOC_014078	NA	non-coding	upstream	1515627	25003517 ~ 25060967 (+)
XLOC_014077	NA	non-coding	upstream	1593086	24959229 ~ 24983508 (+)
XLOC_014097	NA	non-coding	downstream	457165	27033873 ~ 27041528 (+)
XLOC_014104	NA	non-coding	downstream	1397957	27974665 ~ 27976483 (+)
XLOC_014106	BX511306.1	non-coding	downstream	1566427	28143135 ~ 28143254 (+)
XLOC_014109	NA	non-coding	downstream	2212260	28788968 ~ 28824390 (+)

Expression

Co-expression Network