G528026


Basic Information

Item Value
gene id G528026
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000427
NCBI id null
chromosome length 84575
location 13524 ~ 37567 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU606926
CCAACCACATTGTCTCCAGTTTACAGTGAGGATCCTCCAGTACAGCAGAGAGCAGATGAACTGAATCTCCTAGTTTATTCACAGACAGATTCAGATCTCTCAGGTGTGAGGGGTTTGATCTCAGAGCTGAAGCCAGAGCAGCACAACCTTCATCTGTGACTCCACAATCCCTCAACCTGTAGAGAACAATGACACACTCTTCACTCTCTCAGTTCAGATCAACAGGTACAAGTCACAATTCTACACTATTAAATATG
>TU606927
TTTCTCCAGTTTACAGTGAGGATCCTCCAGTACAGCAGAGAGCAGATGAACTGAATCTCCTAGTTTATTCCCAGACAGACTCAGTTGTCTCAGGTGTGAGGGGTTTGATCTCAGAGCTGAAGCCAGAGCAGCACAACCTTCATCTGTGACTCCACAATCCCTCAACCTGTAGAGAACAATGACACACTCTTCACTCTCTCAGTTCAGATCAACAGGTACAAGTCACAATTCTACACTATTAAATATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU606926 False 257 lncRNA 0.44 2 13524 37567
TU606927 True 247 lncRNA 0.45 2 22121 37567

Neighbor

gene id symbol gene type direction distance location
G528036 NA non-coding downstream 2717 40284 ~ 40751 (+)
G528045 NA non-coding downstream 19461 57028 ~ 57711 (+)
G528047 NA non-coding downstream 24914 62481 ~ 62848 (+)
G528048 NA non-coding downstream 26545 64112 ~ 64311 (+)

Expression


Co-expression Network