XLOC_001418 (suclg1)


Basic Information

Item Value
gene id XLOC_001418
gene name suclg1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 43652480 ~ 43684584 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002320
CTGGACTACTAAGTGCGCTGACGTTTAGGTCCATGTCTGTCCGGTGTCATTGGTGAATGACCGAAGATGTCTCACAGCAGGTTGTTTGCCCGCTTGCTCTTGCAGCAAGCAGGAGTGAGACACTGTTATTCTGGATCCAGGAACAACCTTTACATTAACAAGAACACTAAGGTCATCTGTCAAGGGTTCACCGGAAAACAGGGCACATTTCACAGTCAGCAGTCTCTGGACTATGGCTCTCAGTTAGTAGGAGGAGTGTCTCCAGGCAAGGGGGGCAAAACACACCTGGGTCTGCCAGTCTTCAACTCCGTGAAGGAGGCAAAAGATGGCACAGGCGCTGAAGCCACCGTGATCTACGTGCCACCTCCTTTCGCAGCAGCTGCCATCATAGAAGCGATTGACGCAGAGATGCCGCTGGCTGTCTGCATCACAGAAGGAATCCCTCAGCAGGACATGGTGCGAGTCAAACACAGGCTGCTCCGCCAGAACAAAACCCGCCTCGTCGGCCCCAACTGTCCTGGTGTCATCAATCCTGGCGAGTGCAAAATCGGGATCATGCCTGGACACATCCACAAGAAAGGAAGAATTGGCATTGTATCCAGATCAGGCACCCTTACGTATGAAGCTGTACATCAGACGACACAAGTGGGTCTTGGCCAGTCACTGTGCATTGGAATCGGTGGAGATCCTTTTAATGGGACAAACTTCATTGACTGCCTGGAGGTTTTCCTGCAGGACCCAAAAACAGAGGGCATCATTCTGATTGGAGAGATCGGAGGAGATGCTGAAGAGAATGCGGCAGAGTACCTGAAACAGCATAACTCAGGTGCCAATGCTAAGCCGGTGGTGTCGTTCATTGCTGGCTTGACGGCTCCTCCTGGAAGGAGAATGGGCCATGCAGGAGCCATCATTGCCGGAGGGAAAGGGGGAGCCAAAGAGAAGATTGCGGCTCTGCAGTCAGCTGGCGTTGTCGTCAGCATGTCTCCGGCTCAGCTGGGCAGCACTATATTCAAGGAGTTTGAGAAGAGGAAGATGTTGTAACACGTTAGAGGGAGTGTAAGAACCAGACTGCCCTCCCTGCCTTAGGACTTCATCCCTGCTGGAGCCCACCACCGTCGTCCAGGCTCAACAGTGCgcacatttttgtgtttttaactcATTCTCTGAGTATATGTTCTGTGTTTGCACcagaggaaataaaaaaaaaaacatttcaaagtctATCACAGGTTTCGTCTTAGAAGTGCACACAACACAAGAACAAATTCACCTTGTAATCCAGCCACACTCGAAGCAATGTCAGCCATGTGTTGCTATATGTCATAATGTTTTCTCTCCTTCTGAAACGGAAAATATATATCTCTCTCTTCTGCTCTAA
>TCONS_00002321
TGGACTACTAAGTGCGCTGACGTTTAGGTCCATGTCTGTCCGGTGTCATTGGTGAATGACCGAAGATGTCTCACAGCAGGTTGTTTGCCCGCTTGCTCTTGCAGCAAGCAGGAGTGAGACACTGTTATTCTGGATCCAGGAACAACCTTTACATTAACAAGAACACTAAGGTCATCTGTCAAGGGTTCACCGGAAAACAGGGCACATTTCACAGTCAGCAGTCTCTGGACTATGGCTCTCAGTTAGTAGGAGGAGTGTCTCCAGGCAAGGGGGGCAAAACACACCTGGGTCTGCCAGTCTTCAACTCCGTGAAGGAGGCAAAAGATGGCACAGGCGCTGAAGCCACCGTGATCTACGTGCCACCTCCTTTCGCAGCAGCTGCCATCATAGAAGCGATTGACGCAGAGATGCCGCTGGCTGTCTGCATCACAGAAGGAATCCCTCAGCAGGACATGGTGCGAGTCAAACACAGGCTGCTCCGCCAGAACAAAACCCGCCTCGTCGGCCCCAACTGTCCTGGTGTCATCAATCCTGGCGAGTGCAAAATCGGGATCATGCCTGGACACATCCACAAGAAAGGAAGAATTGGTAAGCACTTCATTGGATGGCACCTGTTGTTCCATATCTCTGTAAAAGCCAGTCTTCGTGCCAGAAGAGTTTGACAGCGAAGCAGCTCAGAGCATCACATTCTCAGCCAATAAAACCCTTAAGAGATCCTTAAAAAGCCTAACTTCCCCCCTGTCTTCACCTTCATAAAAGAAGCTTCAAACAGACAGAGCCAGAGGGTCTACATTTCAGACAGA

Function

symbol description
suclg1 Predicted to enable succinate-CoA ligase (ADP-forming) activity and succinate-CoA ligase (GDP-forming) activity. Predicted to be involved in tricarboxylic acid cycle. Predicted to be part of succinate-CoA ligase complex (ADP-forming). Predicted to be active in mitochondrion. Is expressed in several structures, including adaxial cell; alar plate midbrain region; digestive system; musculature system; and solid lens vesicle. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 9. Orthologous to human SUCLG1 (succinate-CoA ligase GDP/ADP-forming subunit alpha).

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0009361 succinate-CoA ligase complex (ADP-forming) cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004775 succinate-CoA ligase (ADP-forming) activity molecular_function
GO:0004776 succinate-CoA ligase (GDP-forming) activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-101 Predicted to enable succinate-CoA ligase (ADP-forming) activity and succinate-CoA ligase (GDP-forming) activity. Predicted to be involved in tricarboxylic acid cycle. Predicted to be part of succinate-CoA ligase complex (ADP-forming). Predicted to be active in mitochondrion. Is expressed in several structures, including adaxial cell; alar plate midbrain region; digestive system; musculature system; and solid lens vesicle. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 9. Orthologous to human SUCLG1 (succinate-CoA ligase GDP/ADP-forming subunit alpha).

Ensembl:

ensembl_id ENSDARG00000052712

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002320 False 1378 mRNA 0.50 9 43652480 43684584
TCONS_00002321 True 803 lncRNA 0.51 5 43672669 43684583

Neighbor

gene id symbol gene type direction distance location
XLOC_001417 NA coding downstream 35311 43518209 ~ 43617169 (-)
XLOC_001416 NA coding downstream 497027 43130890 ~ 43155453 (-)
XLOC_001415 CR925858.1 coding downstream 677605 42974760 ~ 42974875 (-)
XLOC_001414 lrrtm1 coding downstream 873405 42776553 ~ 42779075 (-)
XLOC_001413 si:ch211-71k14.1 coding downstream 1362619 42281308 ~ 42289861 (-)
XLOC_001419 SLC9B2 coding upstream 10449 43695033 ~ 43727613 (-)
XLOC_001420 tacr3a coding upstream 117373 43801957 ~ 43892349 (-)
XLOC_001421 cnga1a coding upstream 209654 43894238 ~ 43899422 (-)
XLOC_001422 enam coding upstream 217382 43901966 ~ 43905263 (-)
XLOC_001423 scpp5 coding upstream 225349 43909933 ~ 43915567 (-)
XLOC_001412 BX927206.1 non-coding downstream 1374830 42277523 ~ 42277650 (-)
XLOC_001410 NA non-coding downstream 1775703 41874937 ~ 41876777 (-)
XLOC_001427 CR385050.3 non-coding upstream 267714 43952298 ~ 43953627 (-)
XLOC_001440 BX908740.2 non-coding upstream 850041 44534625 ~ 44536218 (-)
XLOC_001453 NA non-coding upstream 1408360 45092944 ~ 45096173 (-)
XLOC_001458 LO017716.1 non-coding upstream 1622577 45307161 ~ 45313876 (-)
XLOC_001464 NA non-coding upstream 1954548 45639132 ~ 45647846 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_08454444_08471856 SUCLG1 coding CI01000049 null 8454342 ~ 8471856 (+)