XLOC_001424 (scpp7)


Basic Information

Item Value
gene id XLOC_001424
gene name scpp7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 43917934 ~ 43920576 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002340
CTCTAATGTATCACGTCAAATTGAATGTAATTACAGTCATGGCCAAAATCTTGCTTTGAGATAAGCAAAGATCTATATTTGTGCTTTCAACGCACATTTTTTGTCCTCTTTAATGAAGCTTGGCTACTCACCAAAGCCAATCAGATACTGATGCTATTTTTTGTTTGCCATGCGAATATAAAGCGAAGATCGAGACCGTAGCATCACAAAATCCTCCTCAACTATCCTGATCACGTTCAAGAGACTTAAACCAAGGTAAAGTATGTTTAATTCAACAGAAAACTAAGTTAAAACATTGATGTATTTTGTTCTTAATTTCATATTTCATGTTGATTGTTCCATTTCAGACATCATCAATCATCATGAGATCCCTCATTTTGCTGGCATTCGTCATTGGAGTTGCTTATTGCGCTCCGCAAGTGATGTATTATGAGGTAGAGTACAAACCTGTAATGGCTCCACAGGCTCAGCAAGCGGCCCCTGCTGCAGCAAGACCCTCTGAAATCGAGCTTcttttggcAGCTCAGCAGGCTGCAGCTGGAGTTCCTGCTCAACCCGTCCGTGGCTTCATTAAACACGAGATTCCTCAGCCCGCAGGCAAAGAGAGCATTGAAGTTCTGTACCCCTTCGACTTCCGTCCAGCCCCTGCTGCCCCTGTTGTCCCTGCTGCCCCAGCTGCCCCAGCTGCCCCAGCTGCCCCAGTTGCTCCTGCTGCCCCGGCTCCCGTTCcaaaggatgatgatgatgatcaagaTGACTAAATTAGTGATGCACGGATAATTTGACCAGAAAGTTCCAGAGTGACACAGAAGCTGCTTGTTTTTAGCTAATTGTCATTATTTTCTTGCATTCCAAATTTGTTGATCTGTCAGGGATGGTGCTCTCTCAGAGGCTTGATGCATGAGAGCTCTTAAATCAGATGCTTTTTCCCAACCATGTTTCTATatcttgatttttaataaactatACAGTCAATTCCTTGCCTCCACTTGTGCTTTTTGAGTTGGTTATGTGTTACTATATGGAAATCTGTTTCT
>TCONS_00002341
ACAAAATCCTCCTCAACTATCCTGATCACGTTCAAGAGACTTAAACCAAGACATCATCAATCATCATGAGATCCCTCATTTTGCTGGCATTCGTCATTGGAGTTGCTTATTGCGCTCCGCAAGTGATGTATTATGAGGTAGAGTACAAACCTGTAATGGCTCCACAGGCTCAGCAAGCGGCCCCTGCTGCAGCAAGACCCTCTGAAATCGAGCTTcttttggcAGCTCAGCAGGCTGCAGCTGGAGTTCCTGCTCAACCCGTCCGTGGCTTCATTAAACACGAGATTCCTCAGCCCGCAGGCAAAGAGAGCATTGAAGTTCTGTACCCCTTCGACTTCCGTCCAGCCCCTGCTGCCCCTGTTGTCCCTGCTGCCCCAGCTGCCCCAGCTGCCCCAGCTGCCCCAGTTGCTCCTGCTGCCCCGGCTCCCGTTCcaaaggatgatgatgatgatcaagaTGACTAAATTAGTGATGCACGGATAATTTGACCAGAAAGTTCCAGAGTGACACAGAAGCTGCTTGTTTTTAGCTAATTGTCATTATTTTCTTGCATTCCAAATTTGTTGATCTGTCAGGGATGGTGCTCTCTCAGAGGCTTGATGCATGAGAGCTCTTAAATCAGATGCTTTTTCCCAACCATGTTTCTATatcttgatttttaataaactatACAGTCAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-257 No description available

Ensembl:

ensembl_id ENSDARG00000074132

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002340 False 1037 mRNA 0.43 8 43917934 43920576
TCONS_00002341 True 678 mRNA 0.48 9 43917996 43920371

Neighbor

gene id symbol gene type direction distance location
XLOC_001423 scpp5 coding downstream 2367 43909933 ~ 43915567 (-)
XLOC_001422 enam coding downstream 12671 43901966 ~ 43905263 (-)
XLOC_001421 cnga1a coding downstream 18512 43894238 ~ 43899422 (-)
XLOC_001420 tacr3a coding downstream 25585 43801957 ~ 43892349 (-)
XLOC_001419 SLC9B2 coding downstream 190321 43695033 ~ 43727613 (-)
XLOC_001425 ambn coding upstream 5577 43926153 ~ 43933271 (-)
XLOC_001426 si:dkey-22i16.7 coding upstream 25053 43945629 ~ 43948826 (-)
XLOC_001427 CR385050.3 coding upstream 31722 43952298 ~ 43953627 (-)
XLOC_001428 odam coding upstream 37622 43958198 ~ 43963441 (-)
XLOC_001429 scpp9 coding upstream 49221 43969797 ~ 43973068 (-)
XLOC_001417 NA non-coding downstream 300765 43518209 ~ 43617169 (-)
XLOC_001416 NA non-coding downstream 762481 43130890 ~ 43155453 (-)
XLOC_001415 CR925858.1 non-coding downstream 943059 42974760 ~ 42974875 (-)
XLOC_001412 BX927206.1 non-coding downstream 1640284 42277523 ~ 42277650 (-)
XLOC_001410 NA non-coding downstream 2041157 41874937 ~ 41876777 (-)
XLOC_001440 BX908740.2 non-coding upstream 614049 44534625 ~ 44536218 (-)
XLOC_001453 NA non-coding upstream 1172368 45092944 ~ 45096173 (-)
XLOC_001458 LO017716.1 non-coding upstream 1386585 45307161 ~ 45313876 (-)
XLOC_001464 NA non-coding upstream 1718556 45639132 ~ 45647846 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_08324408_08325532 NA coding CI01000049 null 8324071 ~ 8325553 (+)