XLOC_014307 (gatad1)


Basic Information

Item Value
gene id XLOC_014307
gene name gatad1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43969363 ~ 43976522 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028428
ACcggaagttttttttatttttttatcatggtAAAACATACGGGACCTATCATTCATTGTTTTAATAATGAAGGATCTCTATTTAAGGTTAAAGTAAGGGTCATATTGTTTCAAAATCGCATTTGTTGATACATGTAGACTGTATTCGCTTTTTCAACTGAAAAAATCCAACGGTTTACTTCAGAGATAGCTGCAGGAGCGTTGACTGGTGTTAGCAAACATGCCTCTTGGTTTAAAACCATGCTGTGCTGTGTGCAAAACACAAAGTTCTTCCATGTGGAAAAAGGGAAACCAGGGGGAAATTCTGTGTAATGGCTGCACGGGTAAAGCTGTAAGCAGCGGCGGCTCCGGAGCTTCTGCTTCTTCCACCATCCAGCAGAATAATGGCGGAGGGAAACAGTCCAAACAGGAAATACACAGACGCTCTGCTAGGTTAAGAAGCACTAAGTATAAAGCACCGGCATCTGAAAAAAAAGTCTCCACCAAAGGAAAAGGAAGACGACATATATTCAAACTGAAAAATcctataaaAGCACCAGAGTCTGTTTCAACGATCATCACATCAGAGTCCATGTTTTACAAGGGCATCTATTATCAAATAGGAGATGTCATCAAAGTGATAGACGAGGATGATGGTAAACCGTATTACGCACAGATTCGGGGATTCGTCCAGGATCAGTACTGTGAGAAAAGCGCTGCGTTAACTTGGCTGATCCCAACACAGGCCAGTCCTCGAGATCGATTTGATCCAAGCACATACATTGTTGgcCCTGAAGAGGACTTGCCGAGAAAAATGGAGTACCTGGAGTTCGTCTGTCACGCCCCGTCAGAAtactttaaatcaagaagctGCCCGTTCCCCACATTACCAGTTCGCCCAGAGAAAGGCTACGTCTGGACTCATATAGGACCAACTCCTGCTGTGGCCATCAAAGAGACTGTAGGGTGACGTTAATCATAAAACACTCCACCTTCAGACTGAACTCAACCTTTTATATTCACCACTCTTTCACAAACACTGCTTTCATGCTCTGATTATGATATTGGCCTTTAAGTATTTTGGGAAATTGAAATGTACTGAATATTTGAGCCTCAGAAATCCTGATTTATCATCGAAAACAGAAGCCACTATATATAGGTCAACCAATGGAAACTAGAAACGACAAATACAAAGTTCATTTGTAGCCCATTCTGAGAGttagtaatattgtaatattattatcatgCATAAAGTCATTCAACACGTTTTGTAGTCCTACATGTCTCCTCTGAGCTTCCAGAAAGATTTGCCTGAAAGCAGATTCCagcatttgatttaatttgatctG

Function

symbol description
gatad1 Predicted to enable sequence-specific DNA binding activity and zinc ion binding activity. Predicted to be involved in chromatin organization. Predicted to act upstream of or within regulation of transcription, DNA-templated. Located in I band and nucleus. Is expressed in several structures, including brain; gut; heart; notochord; and pectoral fin. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 2B. Orthologous to human GATAD1 (GATA zinc finger domain containing 1).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0031674 I band cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050629-1 Predicted to enable sequence-specific DNA binding activity and zinc ion binding activity. Predicted to be involved in chromatin organization. Predicted to act upstream of or within regulation of transcription, DNA-templated. Located in I band and nucleus. Is expressed in several structures, including brain; gut; heart; notochord; and pectoral fin. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 2B. Orthologous to human GATAD1 (GATA zinc finger domain containing 1).

Ensembl:

ensembl_id ENSDARG00000027612

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028428 True 1328 mRNA 0.41 5 43969363 43976522

Neighbor

gene id symbol gene type direction distance location
XLOC_014306 ankib1a coding upstream 8610 43905671 ~ 43960753 (+)
XLOC_014305 lypla2 coding upstream 67896 43884120 ~ 43901467 (+)
XLOC_014304 pithd1 coding upstream 88412 43878049 ~ 43880951 (+)
XLOC_014303 eloa coding upstream 135368 43822968 ~ 43833995 (+)
XLOC_014302 NA coding upstream 164953 43800832 ~ 43804410 (+)
XLOC_014308 nkd3 coding downstream 2292 43978814 ~ 43980876 (+)
XLOC_014309 CR786578.2 coding downstream 10867 43987389 ~ 43989462 (+)
XLOC_014310 nkd3 coding downstream 19414 43995936 ~ 43998061 (+)
XLOC_014311 nkd3 coding downstream 27826 44004348 ~ 44006445 (+)
XLOC_014312 nkd3 coding downstream 32951 44009473 ~ 44036792 (+)
XLOC_014300 NA non-coding upstream 177787 43787003 ~ 43791576 (+)
XLOC_014301 NA non-coding upstream 178647 43787142 ~ 43790716 (+)
XLOC_014295 CR356238.1 non-coding upstream 303852 43665391 ~ 43665511 (+)
XLOC_014291 NA non-coding upstream 420352 43546647 ~ 43549011 (+)
XLOC_014314 NA non-coding downstream 940577 44917099 ~ 44959698 (+)
XLOC_014315 NA non-coding downstream 1382755 45359277 ~ 45365727 (+)
XLOC_014316 CT737154.1 non-coding downstream 1532343 45508865 ~ 45508981 (+)
XLOC_014317 NA non-coding downstream 1750692 45727214 ~ 45728062 (+)
XLOC_014321 NA non-coding downstream 2114795 46091317 ~ 46093652 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_00924015_00926256 GATAD1 coding CI01000054 null 923734 ~ 926256 (-)