XLOC_014322 (stmnd1)


Basic Information

Item Value
gene id XLOC_014322
gene name stmnd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46095210 ~ 46100763 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028440
TGAAGAAGTTTATCCGGACCCGAGAACTTCAGAAGAGCCTCACAACCAGCGAGAGACGAACATGGGATGCGGGAGCTCCAGAATCACGGTGGTCGAGCCGGTGAAAACGAGCAATCTGAACGGAAATGAGacggacactctacagtttgatgTGGCTCAGGGAGGATCGCGTGGTGACTCCGCCATCTCCAAAATGACCATAGACAGTGGAGTCAGTCTGGATGCGGCAGAGGCGGCAGGTCTACCTGGAACTGTACCTAGACTACTACCACAACTGCAAGCCCAGACCCCAGGACACAGCGAGGAGAGACCTGAGTCCAGTGAGATCCTGGAACAGCTTCTGGCTCAGGGAATCATTCCAGCTCAACCCAAACACGGAGAAAGTGGACAATCCTACAACATCATGatggATGACACTGGGAAAGCCAGAAGCAGACCACCCGCTCGGCTGGAGTCTCTGAAAACACGCAAAGAACAAGAGATCACCAAAAAAGAGGACATCGAGATGAAGATGAGACTAGTGGAGGAGAGGAGAAAGGAGAGAGAGGAGGACCTGAAGCGCAGGCTGCGGATTAAATCAGCCCGTCCTCGTAGCTCTGCCCCAGTGAACTCGGAAGGAAAGCTCGACCCAGAGGAGCTGCTCCATTCTGAACAACTTCCAGTCCCAATCAGAACCAAACATGGAGAATCTGAGGACCACGCACTCACTGATTCACCAGAACTGGAGAACGACTCTACCTTCCAGCAGAACGGAGACACAGATGAGGGCTTTTAAATCTACACATacaggttaaagggatagttcacgcatgAAATTAACATTTACAGCTAATTTACTCACATTCCAGGCTATTGAAGATGACTTCTTTTcgtcagtagaacattaaaagtGCAGTTTGTAGGACTGACATCT

Function

symbol description
stmnd1 Predicted to enable tubulin binding activity. Predicted to be involved in microtubule depolymerization; neuron projection development; and regulation of microtubule polymerization or depolymerization. Predicted to be active in cytoplasm and neuron projection. Orthologous to human STMND1 (stathmin domain containing 1).

GO:

id name namespace
GO:0051493 regulation of cytoskeleton organization biological_process
GO:0007019 microtubule depolymerization biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0031175 neuron projection development biological_process
GO:0043005 neuron projection cellular_component
GO:0005737 cytoplasm cellular_component
GO:0015631 tubulin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130201-3 Predicted to enable tubulin binding activity. Predicted to be involved in microtubule depolymerization; neuron projection development; and regulation of microtubule polymerization or depolymerization. Predicted to be active in cytoplasm and neuron projection. Orthologous to human STMND1 (stathmin domain containing 1).

Ensembl:

ensembl_id ENSDARG00000102611

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028440 True 913 mRNA 0.50 5 46095210 46100763

Neighbor

gene id symbol gene type direction distance location
XLOC_014321 NA coding upstream 1558 46091317 ~ 46093652 (+)
XLOC_014320 si:ch211-153f2.7 coding upstream 114478 45970692 ~ 45980732 (+)
XLOC_014319 utp23 coding upstream 127492 45962016 ~ 45967718 (+)
XLOC_014318 FO704771.1 coding upstream 131946 45844363 ~ 45963264 (+)
XLOC_014317 NA coding upstream 367148 45727214 ~ 45728062 (+)
XLOC_014323 rbm24a coding downstream 13065 46113828 ~ 46148977 (+)
XLOC_014324 cap2 coding downstream 57315 46158078 ~ 46210904 (+)
XLOC_014325 NA coding downstream 115572 46216335 ~ 46219040 (+)
XLOC_014326 vps28 coding downstream 121665 46222428 ~ 46238624 (+)
XLOC_014327 mapk15 coding downstream 139408 46240171 ~ 46303622 (+)
XLOC_014316 CT737154.1 non-coding upstream 586229 45508865 ~ 45508981 (+)
XLOC_014315 NA non-coding upstream 729483 45359277 ~ 45365727 (+)
XLOC_014314 NA non-coding upstream 1135512 44917099 ~ 44959698 (+)
XLOC_014331 NA non-coding downstream 322328 46423091 ~ 46438135 (+)
XLOC_014334 NA non-coding downstream 1087767 47188530 ~ 47191501 (+)
XLOC_014337 CU138512.1 non-coding downstream 1205860 47306623 ~ 47306738 (+)
XLOC_014339 NA non-coding downstream 1236819 47337582 ~ 47338157 (+)

Expression


Co-expression Network