CI01180000_06911043_06921434


Basic Information

Item Value
gene id CI01180000_06911043_06921434
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6910996 ~ 6922648 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_06911043_06921434.mRNA
AATATAAAAGAACTTTAAAGAAATGTTGAAATACTGTGCCAAAGGACAATGCAAGGTTTGACTGTGTTGATCACTAGAGCTGAGTGTGAGAACGAACTGTTGAATCTATCAGCAGGTGTATGCGTGTCTTTTCAAGTATACATGAAAGTGAAAGCAAGCTTATGTAAAGCTCCTCCGAGAAGAAAGGCACATTCCCTGAAAAGGTTTCAGGATTGTTTAATAGCAGTTTGGGCAAAAAACATCTTTCAAAGGTTGACGATGAGAAGATCCAAAAAGCAATCCACCAGTGACAACTTTGAAATCAACAACACAGAGATCCCTCTAAAGCCATGCACAGTTTTGAAGATCAGAGATTATATACAAACAGATATGCTGAAGGAGGCCTATCTGAACCTGCTCTCTATGCGCCTGAAGCTCCAGAAAGAATGGGAAGCTGTAGGGGAAGGAGCTCCTCCCACGGATCTTGTTAATAAACAGACGGATGCCAGTATGCTACTTGGGACTCTAAGAAACAAAATGTCTGTCATTGTACGCAACTCCAGTGCTCTGCCCTCATGCAATAAAGAGCTGTTGGTGTATGTAACACACATTATCCTGGAGGAAGAGAAGAGACAGGGAGAACCAGGAGCGATGCAGGGATGGAGGGAAGCTTGGAGGGATGCGATACGAGACGGGGTTCAAGATACTCTAAAGAAAGTTCATCTGGACAGCCACGAGGAGAATGCTTCCTGGTTGGCAGTGCATCTGGGGCTTCTGGGTAAAGCTGTGGTGGAGGATTTGGAGAGAGTGAAGACCGAACTTCTGAGCTCATATCCAGAAGACTTTAATGTGTTTGAAACCTATGTGTCCTGCCATCGTGAGGCTGTAGGAGAGCATTTAAAGATACTTCTGGAAAAGGTGACAGAGCTGAAAGATTACTACGCTCTTCTAGATTTCATTGTTCATCGCTACCCTAGTGATCTGAGAGACAAGCAGAGAACTCTTATAATGGAAGAAGACTTGCTAAATAAAATAAAGACCTTATACTATCATCGCCAAATGGACGACTTTAAATCTGCACTGGAGAATATCATCATAATTGAAAAAGAAGTGTGGACAATGAAGAAAACTCCTTATAGAACAGATGATGGATTCCTCACTTCGGAAACCTACATGGACATCTGTAAGCTGATAGCAAGTTATGCTGGGAATCTTGAGAAGATCGATGAGAATCTGGGGAAGTCAGTGGTACGCTTTTGTTTAGAGGAGCTAAATCCATTTCATACAAGATTTGAAGAAGAGTTTTCACAACACACCAGCTCTCTGTTGACCTCTGACCTGCTGGACTGCTGTCTATGGGTACAATATCACATCAGCTACATCAACAGTTTTAATTCACTTAGAGAGAATATGCAGTGCTATAAGGAGAACTGTTCAGCTCAGGTGGAGCAGCTGGAGAAACAGGTGGATGAACTGATTCAAAGACTTAGCCAGACCCTGATAAATCATTTCAAAACTGATGTCAAGCCTTACATTGATGGTATGATGACAAAAAAATGGCTGAAAACAGATGAAGATTTTAGAGAAATTGCTTCTAGAATAGAGAATTATCGTGGGCTCTGTAAATCCATGAGAGCTCCATCAGCTCAAGTGAGTCCTCTCATCTGCTCAGAGATGCTCTCTAACGGCTGCAGAGCACCACTTTTAACACAGTGTCTGTATCTGCAGGTTTTTGTGAATGGTGTGCACTATTATGTAGCCAGAGAATATGTCTCCCAGCTGATGAAGAAAAAATATTCATGCAAAAAAAACAAGAACGAAGATGCTGCCGCAAAAATGAGAGAACAATGGAATGAACTCAAGAAACTATTTGAGGACATGGGATCATCCTTAAACTGGCTTTATCCATTGGGAGATTACCTTAGCGACATTATTGGAATGAAAAATGAGAAAAAGATAAAAGAACTGTTAATTCCATTAGTTAGTAATTACCCAGACATCAGCAAGAAGCAGTTATCAGCTGTTCTGTACTTCCGAGACAACAGTTTTAGCTTGGAAAAGCACAATGTTATCAATCAGTTTACTGTGCTTAAACGGGATGGTTTGAACACAAATCATGATCACTCCTTCTTCACTGACATTGAGGTACTTTCCTGAAATACAGTATTTGTAGATGTGCGATACATTCTTTGATGCACTAAATTCTCAGATAACAGTGAATGAAATAACCAAATATCATGTATGTTTAATTTAAAAAAAAAAAAATTATATATATATATATATATATATTAATTAAAAATAAGCAAATGGCAAATATTGGTAAAAATGGCTGATCATATCACTGTATTACCTGACTATTTAAGGACTAAGGACTTTATAAATGCACATATTCATATGTATATAGGCATTCGTTTATTCTTATGAAGTAATACAATTTTATCTTTTACAGTGATATTTCTTTTGGCCACTCTGCAGCTTCAAGAACCATCAGGTTAAGAAACAACAAAGGCAAACTATGAGGAAAAATAATATAATAATATAAAAATAACAATCTTGATAATGTTATTAAGAAAAACCTGTACAGTACATTACACACTTGACTTCTCTTACTCTCTGGCTACCTATATACTAATTCTCACACTCTCCCCCCCAACTGTGTCAAAAAATGGAATTACAACAGACATTCAATACAACATAATGGCTCTTACACGCTCTCTCTGCACTGCTAAAAAAAACACCCATGATCTGAAAACACAGACAAACATATGTGGGAGTTTATTAATCTCCATTACCATATTCTGCTCACATGAAAGTGTAATACAGCCAGTCTGTGTTCCTTCACGAGGCTGCATGTGCTGTTTGCTGCAATGCTAAATTTGTATGCTAAGCTTCTCTGATGAATTGTAGTAAATCCAAACATGAATTTTGACTATGTGGTTTGCAATTGCAGTTGCCGTATAAATGTATTTACACAACCTTTGCGCTTTTTTTTTTTTTAATAACATAATTTGGAATTACTGGAATTAATTTTAGAATTTTTAGCTTCAGAGAGAAGCTTCTGAATGGTTTTACTAGTGTTCATAATGTAGAGAGTGTGTTAATGTATATGATAAATATAATAAATCAGGAAATTATGAGGTAAAATAAACCCTAAGTTGACGTTCTCTTGAGTTGTACTTGCAGAAAAAGTGCAATAATTCTGATGAAATGTAAAAAGAAATTTCTAAAATTAGACCAATCGTGATTATTAGGCTAATCATGATTATGGTTTTGTGCAAAATTATTGTGATTATCAGTTTATCATGCAGCCCTAATATGGCCTGGCTTATGTTTTGGTTGTTTGTCCTTATATCTACCAATAGAGGGAGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_06911043_06921434.mRNA True 3349 mRNA 0.37 13 6910996 6922648

Neighbor

gene id symbol gene type direction distance location
CI01180000_06839627_06853120 NA coding upstream 57289 6839001 ~ 6853707 (+)
CI01180000_06828109_06832096 NA coding upstream 78886 6827831 ~ 6832110 (+)
CI01180000_06813558_06824034 NA coding upstream 86474 6812662 ~ 6824522 (+)
CI01180000_06762114_06762590 NA coding upstream 148224 6762114 ~ 6762772 (+)
CI01180000_06755090_06760583 NA coding upstream 150413 6755090 ~ 6760583 (+)
CI01180000_06992692_07007925 NA coding downstream 70044 6992692 ~ 7008521 (+)
CI01180000_07023336_07025503 NINL coding downstream 100688 7023336 ~ 7025607 (+)
CI01180000_07064360_07069339 NA coding downstream 141609 7064257 ~ 7070578 (+)
CI01180000_07100974_07142837 GBF1 coding downstream 178326 7100974 ~ 7142960 (+)
CI01180000_07222655_07236693 NA coding downstream 299975 7222623 ~ 7237422 (+)
G681755 NA non-coding upstream 19912 6890884 ~ 6891084 (+)
G681749 NA non-coding upstream 32157 6878561 ~ 6878839 (+)
G681739 NA non-coding upstream 73298 6837319 ~ 6837698 (+)
G681708 NA non-coding upstream 173095 6737599 ~ 6737901 (+)
G681706 NA non-coding upstream 174903 6735853 ~ 6736093 (+)
G681791 NA non-coding downstream 61822 6984470 ~ 6984674 (+)
G681758 NA non-coding downstream 62377 6985025 ~ 6990500 (+)
G681813 NA non-coding downstream 238094 7160742 ~ 7161014 (+)
G681898 NA non-coding downstream 268302 7190950 ~ 7191154 (+)
G681899 NA non-coding downstream 273657 7196305 ~ 7196527 (+)
G681667 NA other upstream 251450 6655846 ~ 6659546 (+)
G681686 NA other upstream 276007 6632908 ~ 6634989 (+)
G681592 NA other upstream 431997 6471995 ~ 6478999 (+)
G681268 NA other upstream 1537234 5370410 ~ 5373762 (+)
G681137 NA other upstream 2125365 4783305 ~ 4785631 (+)
CI01180000_07403482_07412752 HELLS other downstream 480499 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 740775 7694529 ~ 7695667 (+)
G682232 NA other downstream 1445537 8368185 ~ 8368935 (+)
CI01180000_09036547_09038313 MGST3B other downstream 2113769 9035736 ~ 9038892 (+)
G685188 NA other downstream 3897338 10819986 ~ 10866176 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006423 si:dkey-45k15.1 coding NC_007124.7 CM002897.2 7368994 ~ 7432715 (-)