G679520


Basic Information

Item Value
gene id G679520
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 356344 ~ 361291 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU800261
TAAAACACAGAGCCAGCCTTTACAGACAGAACAAAAACAAAGATGTTTAGATCTTCAAAGACGAGTCTTTAAATGGCAAACATGGAAATATTAACTGTCCGAATATCTGTGTTAACTCTTCTGCTGTATCCACAGATCATCACAATGTGGACAGTGCAAGCGCAGGGTTTTCTGTTTTAGAGAAGCGCGACAGCATTTTCTGCCTGGGTGAGGTGACAAAGGGATTCTATCGACAAGCTGAATACCTGGATAAACTCAAAGAGGAAACAAACTCATCTAAGCCACTTTTGGTACGCCCTTCAGTCAGTGTGTATACTGAGTTTCCTGAGGAAGAAGGAAAAGCAAATGTCCTTTACTGCTATGCCACTGGGTTTTACCCTGGTGACATTGAAATAAACTTGTTTCTAAATGGCCGTAAGTCCATTGTGAAGGTAGAGACGTCTGACTTAATATATAGCAAAGACTGGACCTTCAGAGTGTACAAGTACATGACTATCACCCCACGGACTGGAGACGAGTACACATGTGAAGTGAGACACAGCAGTATGGCTGAACCCAAAATAAAAACGTGGAGGCCTGAATTTTCAGCATCCACATCACATCTCTACTGGGCTTGTTCACTACCTCTCGGGATCCTGTTGGGCATCATGACATCTGTCTTGATTTTAAGAAGAAAACAGCGTTCTCTGTTATAACGATGCTTTGAAAAACTGCAGTATATATATGCATATGTAAACTTTCTGGCTTATTCTACAGAATTGGCTCAAAGTCAGAGTTGGAAACATCTTGAAAATAATGTCTTTTTCCACAAATTTTCCACAAAATATCCAGGGTACACATTTAATTATGCAGTTAATTCTTATATTGTATTTTCAGAAAGTTTTTGAATGTTTTTCCTTTCCCCAACTTTGTCACTACCGAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU800261 True 505 lncRNA 0.40 2 356344 361291

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006940 zmp:0000001138 coding NC_007124.7 CM002897.2 47803499 ~ 47810394 (-)