G680192


Basic Information

Item Value
gene id G680192
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2693355 ~ 2695436 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU801024
AGATAGAGTCCATTGACCGGCGAACGGCGCCTCAGATGCGGGGGATCGCAGCACTCAAAGCGGGCGTGAGATCTGCCGACGGCCGGCGGCTGGATTCTGCTTCGGAAACTCCCACAGCCTGAAGGACACTTTTGCATGGGAAACATTCGCAAAACTTTTGAAACTTGCAATTCTCGTTCCCTTGGATGAGTTGTCAAGTTGTGGGCACTAAACTTTGTCGTGCACTGTTGTACTTTGTATGTCTGTTGTTGTTTGGCGGTTCATCCTGTGGTTCACGCGCACCAATGTTAGCTGTCGGGCAGATGGATACTAACCGGCAGAGTGCGTTCGTTCTGGGCAGCACTCCACTGGCTGCGCTGCACAACATGACCGAGATGAAGACCTCTTTATTCCCGTACACCCTGCAGAACCCCGCGGGCTTCAAGGCTCACTCCCTCGGCAACCTGAACTCTCAGATTCCCCTCGGAACGCCGCATGGAATAAGCGATATCTTGGGGAGACCCATCACCACCGCCGGACAGCTGCTCTCGGGCTTTCCCAGGATCAACGGGTTGGCCACATCAGCTGGGATGTACTTCAACCCGGCGGCCGTGTCTCGGTATCCCAAACCCCTGACGGAGTTGCCCGGTAGGGCGCCCATATTCTGGCCGGGAATGATGCAAGGTTCACCCTGGCGAGACCCGCGGGTTCCCTGTCCGGGTGAGTTTTCCTGGCCTAAATGAGATTTGGATTGAATCTAAACAGTCTCACTTTTAGAAATAAATAAAGGTTCCAATGAGTGTTTTCCACAATAAACATTTTGGGTTACACAAAGAACCTTTCAGTGATCAGTTTAATAACATATTTAGAATCTTTTTTGCAATGGAAAGATTCGATGCCAATAAAGAACCTTTATTTTTTTTTTTGGAGTTGTGTTTTTCACGCTCAGATTGTTGGAATATTATTTTGCTGTGTGTCTGACACTTGACATGTCAATGATATTCCCTCACAATGTAAAGTTTTGGCTTTATTTGGCTGACCATGTCTCTTTTTCTTCAGCCCAGGCGAATATGATGCTGGACAAGGATGGCAAGAAGAAACATTCCAGACCAACTTTTTCAGGACAGCAGATTTTCGCGCTGGAGAAAACCTTCGAACAGACCAAATATCTGGCCGGTCCAGAGAGAGCAAGACTCGCATATTCTCTGGGAATGACCGAAAGTCAAGTCAAGGTAGATAGAGACGGGTCTTTATTAAAACGTTTTTATATTGATTGACTTTTTTTCTCTCAATGTAAACGTGCAGCATGAGACGAATATTTTATCTGTGAAAGTCACTGTCATGTACAATATGAATTTGCAAACAAGCAAAACAGTTCATTTATAACGTTGAATTATTGGGATTAATAATAGGCTATTTTTAACCATTTTGCGGTCAATGTTGCACATCATTGCCTACCGTTAGGCCTAATATTTACACACTCTCTGGTCACACGAAACTAATTTTGTATTATTTTAAACAATCATTTGCTCTTAGTTAAATTTAGATGATTCATTTTCTTGGTTTAATTGAGTTCAATTAATTTAATCGTTGCATTTTTAGCTCTCACAGAGATGGACAGTGTGTTGACGTGTTTTTCTCTCTCTCTCTCAGGTTTGGTTTCAGAACAGAAGAACCAAATGGCGGAAGAGACACGCGGCTGAAATGGCCACGGCTAAAAAGAAACACGATTCAGAGACGGAGAAAATGAAGGAAAGCTCGGAAAACGAGGAGGATGATGAATATAACAAACCTCTGGACCCGAACTCCGACGACGAGAAAATCACAAGACTGTTGAAAAAGCACAAGACGAGTAACCTGTCCCTCATCAGCCCGTGCAGTAACAGCTCGGACACTTTGTGATGATACTGAGCAAAAGACTCTTCATTATCATCATCATCATCTGCCTCAGATTCTTCTGGGAAAATGAGACAGAGTTAAGCAGGGTATAAACACACTGTTCACGCTGCTTTTGCTTTGCTTTGAATGCGGTTGTACAGTTAGAAGTGGACGTGAGATGTATATATATTTTTTACTGAGTAAATTATGTTATGAAAGCATCACGAAGACGTGCCAACTTTCCCTCATCATCATCATCATCATCACCACCACCATTTAAGATCATCTTTGTCTTCGATCGCAGAAGAATAACGACGCATATTTCGCCTAAAAGTTTCACTTTTTTAATTTTGAAAACAGGTACACAAAGTGTATAAAAGTGCCAGTGCTGTAAATGATGTGAATAGAATTTGTTTTAACAATGTCCTTTTGGCCGCTTATACTTTCAATGGAAGGAGTTTATGTTTTACCTCACAACACGAAAAATACACAAAGATGGACATAAATATCGATGAAGAGAATATTATTGCTTCCGTGATGAAGGAAGAAAAAACTTTGTATTATCAATAAATTATTTAACAAGCCAATATTTTAAATTTGTCCTGGTTCTTTACAATTCCATCCATTTATTTACTGTTGTTTAAACCTTTTTTATATTGTTAATAGCGCATATTTTTGAGCTCATTATTTGGCCACGCGAAAGATGCAAACAAATGCATATTATCCGTGCATTAATTGGCTATTATTAATAGTATATAGTAGGCTAATGATAATAAAATTCCTACATTAAGATCATAAACATTCATATACAGACGAGTAGGCTATACGTTTATAGAGGAAAACCAATTTTCTACAGAAGCTTTTTCCATGTAATAAGAGGAATATTTCATCTCTTTTCATGGTTATTTAAGGACATTTAGAGATTTTATTTTCAAGAGCCCAAACTGCAGGTTCACCTCGGACAAATAGGCATTCACAGATTTTGTTATATTCCTATTTCTCAATCTAAACGAGCCTTTTTGTGTGCGAATCATTTAACGGCTTTCAGGAAGGCCAACTTTTCTGTCAGTTGTTTTCGCGGGTTTGAGTAATGTAAATGTCTCGTGACCCCATCAACCCTTAAAGACACGTTAAACAAAATGTTTTTGTGAAACATAAATTATTTTTAAAAAATCTGAGTAATGACAGTACACTACTTAGGTTTTGTAGCGTACAATTTCGATATTGATAGTAACGAAAATCGCGCGTAGCGATCGCGATCTCTATAACGAACTTGTAATATAACTTTTGTGGTTACAGAAATATTCATAAACGTTGTTAAAACGTGTTCATATATATACTTACATGCAAAAGAAAAACATATTTCCGAACCTTTTGTTTGAGGTTGTTTTAACTGTCACGTGACTTACGTAATTTCATCCTGAGACATCTTCCGCCATAACAAACTATTATATCACATGTTCAATAATATATTCATTTTTTATAAACAGTTTGATGAACACACAATATCATATTAGGCTATATAACATAATACTGTTAAAAAATATTAATGATGATGACGAGTAGCCTAATGATAAATAATGCGACTTCAAAACAATATATATATATATATATATATATATATTCAGGCACCATCATCTACAATGATGGAAAATACATCTAAATGTCAAAGGCTTGTTTAGTGAATCTCAGGGGGTTACTGATTCAGTGCTTGACTAATGACAAAGAGGCATTGATTCATTCATTCATTCATTGAGTTCTAATGGTTTTATTGCTTTTGGAGGTCTTGCCATCCACGAGGTCTAATCGCTATCTGCTTAAAGAAAAGAGTGAATCCTATCACCTGACCTGCTGGGGAAAAAACAGTTAACAAGCAGTTTTTCTAACCAAATCACTGTCAAGGCGACACAAAATCATTTCCACTGATATGAAAGATCAATCTAACGGATTCACACAGTCTGTCGACTCTGTAGTGTAGTGAATTAAATCAGGAGGAGCACACGGCACTGATGCTGAGAACATACACAAGGAATTAAACAGAAACACTCACACTTTACTTTACAGTGTTCGTGTAACTGTGCAATTTAAGTAAAATACTAAAACATGGACTTCATATGTGATTATGTTTGTAAAAAGACACAGTTACTCATGTGTGAAACTGACATTGTAAAGTAAAGTGTAAAGAAATTTCTCATGGTCCTTAATTTGAGTGTTTTTCCTGCATAATGCCATCAGAACTTAAACTCTACATTTGACTGAGTTCAATTCAATAGTTGGCACCACGGCACAATAATATAGTAACAAAAAAATCATACAAAAAAAAAAAAAAAAGAAAAAAAAAAGGATACAGCTATTTTTAAGATACCCAGGCCTATTAAAATATCACATTCAGAACCATAACATTATTACACAGAAATAAGTTAGAATAAGAACAGTACTGTAATAACCGAGCAAGACTGCTATTGAAACTATCTTATATACTT
>TU801020
TCATTCATTGAGTTCTAATGGTTTTATTGCTTTTGGAGGTCTTGCCATCCACGAGGTCTAATCGCTATCTGCTTAAAGAAAAGAGTGAATCCTATCACCTGACCTGCTGGGGAAAAAACAGTTAACAAGCAGTTTTTCTAACCAAATCACTGTCAAGGCGACACAAAATCATTTCCACTGATATGAAAGATCAATCTAACGGATTCACACAGTCTGTCGACTCTGTAGTGTAGTGAATTAAATCAGGAGGAGCACACGGCACTGATGCTGAGAACATACACAAGGAATTAAACAGAAACACTCACACTTTACTTTACAGTGTTCGTGTAACTGTGCAATTTAAGTAAAATACTAAAACATGGACTTCATATGTGATTATGTTTGTAAAAAGACACAGTTACTCATGTGTGAAACTGACATTGTAAAGTAAAGTGTAAAGAAATTTCTCATGGTCCTTAATTTGAGTGTTTTTCCTGCATAATGCCATCAGAACTTAAACTCTACATTTGACTGAGTTCAATTCAATAGTTGGCACCACGGCACAATAATATAGTAACAAAAAAATCATACAAAAAAAAAAAAAAAAGAAAAAAAAAAGGATACAGCTATTTTTAAGATACCCAGGCCTATTAAAATATCACATTCAGAACCATAACATTATTACACAGAAATAAGTTAGAATAAGAACAGTACTGTAATAACCGAGCAAGACTGCTATTGAAACTATCTTATATACTTGCATGGTTTATGGCACTGCTTAAAAAAAAAAATAATTAAATTGGCGCTATATATATATATATATATATATATATATATATATAAATCATATTGGCTGAAATGGCATATTCTGCTAATAATGATGTGGATTTCATTGTTTGTTTATAACTATTCAAACATTTGAAACTTTACACCCAAAGCAGCCTTTCATATCAATATGTCAGCATAAGAGTTTTGGTACGAATTATAAATTATCTCTTTAAAAAGTACAGTATATAAAATGAGACTCGGCGGTTGTATGCGGCACGGCAGAGTGTTTCGACACAAGTCGGCAACAACAAATCAAAAAAACAAAGATAAACAATAGTCCATAAAGAAAGAAAATCATACAAATGCTTAAACAGAATATACCTATCTATTCTAACACAGAGAAAGTCTCGAAATCTCCATCAAACAGCACTAAAAATCAGCACACCTCTATGTCATAATCCAATGTACAAATAAACCTAACAATAGAGAAATACAACAACTTTTTTTGCATTGCACTTTTTAAAACATCTTACATACTGTATGGAAGTAGCTCGTAATATTATGTTGAGGCATATCTAAAAATTGCAAGTATGCTTTTTAAAATCTGTAGAGTATTTCTGATGGTCTATATTAGAGTTTTGGAAACAAGGCTGAGAGACGTCAGAGAAGAGCATCTGATGGCGTTTGAGTGGAAATGCAGCGCTGCATGACAGATGCATGCCGCATTAAGAGTGTGTGTGTGTGTGTGTGTGTGTCCATGATCTCGACTCTTGAAGCATTCATGAACTCAATGTGTCGTTTCTATGGACATGATTGCATGCACTGCGACAAATGCGACTGGTCAGTCCTGCTGAAAAGTCTTTACAGGGTCCTCTGTTTGCGTGTGTGGTTGTGTGTGTGTGTATGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCATCCACCCGTGTCGGAGCTTCTCACAGGGCCGCTTTTCATGAAATCTTCTCCACCCTTTGGCACCATTTTCCTGGCCACATCACTGCACGACACAACACTTGTGCTTATTTGCATTAGGTTTACCTGCCCCTGTGCTT
>TU801022
CCCAAAGCAGCCTTTCATATCAATATGTCAGCATAAGAGTTTTGGTACGAATTATAAATTATCTCTTTAAAAAGTACAGTATATAAAATGAGACTCGGCGGTTGTATGCGGCACGGCAGAGTGTTTCGACACAAGTCGGCAACAACAAATCAAAAAAACAAAGATAAACAATAGTCCATAAAGAAAGAAAATCATACAAATGCTTAAACAGAATATACCTATCTATTCTAACACAGAGAAAGTCTCGAAATCTCCATCAAACAGCACTAAAAATCAGCACACCTCTATGTCATAATCCAATGTACAAATAAACCTAACAATAGAGAAATACAACAACTTTTTTTGCATTGCACTTTTTAAAACATCTTACATACTGTATGGAAGTAGCTCGTAATATTATGTTGAGGCATATCTAAAAATTGCAAGTATGCTTTTTAAAATCTGTAGAGTATTTCTGATGGTCTATATTAGAGTTTTGGAAACAAGGCTGAGAGACGTCAGAGAAGAGCATCTGATGGCGTTTGAGTGGAAATGCAGCGCTGCATGACAGATGCATGCCGCATTAAGAGTGTGTGTGTGTGTGTGTGTGTGTCCATGATCTCGACTCTTGAAGCATTCATGAACTCAATGTGTCGTTTCTATGGACATGATTGCATGCACTGCGACAAATGCGACTGGTCAGTCCTGCTGAAAAGTCTTTACAGGGTCCTCTGTTTGCGTGTGTGGTTGTGTGTGTGTGTATGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCATCCACCCGTGTCGGAGCTTCTCACAGGGCCGCTTTTCATGAAATCTTCTCCACCCTTTGGCACCATTTTCCTGGCCACATCACTGCACGACACAACACTTGTGCTTATTTGCATTAGGTTTACCTGCCCCTGTGCTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU801024 True 880 TUCP 0.38 1 2693355 2694234
TU801020 False 1830 lncRNA 0.36 2 2693497 2695436
TU801022 True 920 TUCP 0.40 2 2694407 2695436

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110502317 LOC106605012 misc NC_048587.1 CM023241.2 15237632 ~ 15429967 (-)