XLOC_001466


Basic Information

Item Value
gene id XLOC_001466
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 45696834 ~ 45700570 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003467
GTAGGTTTCTGTATTTTTGTATAGAACAAATACATATGAACATAAAAATCAGACATGACCCCGTCAGGACATTCAGAAAAATGTGCAATAAcacttgagtaaaaaaaaataataaatcagtagATTCTTCTACATCATTTCATCCGTAATGAAGGTTTCTGTTACCTGCACGAGCTGTTCATCACAAAACATTCCAAACAAAAATAAGCAGCAGACGACAACGAGACAAGAAACAACAGGGTGAAAGTTGCAATTGTGTGCACCCTAACGCATTAGTGATAGAGAGTGTGCTCTGTTTTGTGCGCTTTCAGTTCATTTGAAACAGAGCTGACATGAACTACACATTCAAACAAAACGATACAAAAGACAAATGGAAAAACAAAATCATGTACTATGACCAAAAAGACCAACGTTGAAGTAAGACGACTGGTCCCACTTATTCTATACTGGAGTAAatggaaattaaatatttatacttcTCTTATCAGTCAAGTATACAGTGGAGAAGATAAAACCAGGCTTCTTTTGTCCTTTGAAGAGGGACTCGTGTTTGATATGGGTCCAGGCTTACTGATGAGCGCTTTTAATATGAATCACAGGAACAAaactggtaataataataatattaatagcgtTCTTGGATCAATTGAggcctctatttaaaaaaaaaaaaaaaaacgtacttgAGGAGAGCTCTAAAAAGtctgtttttacaataaaaccctAGATTAAATACAAGGCTGATCTAGTTTGATTTTATAAAATAGCATTGTACTTTACAATATGCGAAGCCATTCTGTCTGCATATAAAACACTTGTTGACAAATGACGGAGAAGTTTACGCCAGTCATCATTtgtatcaaaaaaaaattgagaCATTAAATAAACTTCATCCtatttaatgtctcatccaacaAGGAGTTATTAAAGCCAACGATACAAGTCAATAAAAAATGTCAAgtggaatagttcacccaaaaacacaaGGGAAGATATTGTGAGGAATGATGGAATAAAAAGCCATTGACTTGTATTGCtttactatagatgtcaatggttgttttttttcaacattcttcagaatatcttgatttgtgttcaacagaataaagtatACAATATTAGAATCACTTTAAGTGAGTAAATGTTGAAAGTTTAATGTGTAACTATCTCTTTAAGGCCAAGTTTTTTTAAGGCATTCTGAGTGTTGGATGTGAAAGCCAGGTTCTACCACtgaataactcagaattctgactttatatcccGGAAATACAGCTTTATTGCACAGAGTTGTGAGATGcaatctcagaattctgactttataacATGGAAATGCGACTTTTATCTCAATAATTGCGATATATAGTCAACGTTCTGTCTTTGCAACTCAAAATTGCAACTTTTATCTCAGAATTCTGCCTTTATTTCCCAGAATTGTTGGTTTAAGTCACACAATTTTGACTTTACAACTCACAATTTCAAGTGTACATCTCACTATGCATATAAAAGAAGGTCAGAGTTGTGAGTTTGTGTCATGACATATGCAACTCTatggaaaaaagtcagaattctgaggaAAAAATCTCAATTCAATGGCGGAAATGGGCTTTTCACAGTAAACTCTAATTGCAGGGCATGTATGTTTTCTTATGGGTAAGTGTAGATGATTTCTAGACACATATAAATCTCCTCCAAGTGTTGTATAAGAGCAGACTTTACCAAAGCTTGATTATCTTTAAATCACATGGACTCCTCGTTTTCAGACATTTAGGCCAGCCTGTTCAATCCCCTTTAGAAACATCTGAAGCAGACATTACACGTGACTTACAAACATACAAAAACCCCTCCATTAATAGTTCTGAATCAGTGACCGCGATGTCTCAACTGGAGACCCACTGAAGACCACTACATGGGCACTAAATGAGCTCAACATATAAGGAATGAGTGCTGTACATATCACGTCATTTGTTTAATATCCTCAATTCAAACCTTCCGAGTGTTTTTAATCAGTCCAGACTAAAAAAAACGGTACTGGGCTGCCTTTAGCAACATCCAGAGTTAagataaatctaaaaaaataataataaaatgaggtAAATTAAAACTTGGAGTGATTCAGCTGTAAAAACAGTTTCTGCTTTTCTCCACTGAAGGCTCATGGTGATTTCTTGGGTATTGAGTTTTCCTTATTTCACCTTTTTCTTCAGTTGTGTTGCATTACCGCATTGTGACCAGCAGAGGGAGGCGTTTCAGGTCCTATAATCTTCTAGTTGACAAGGAGGACGTCCTCATATGTGGTGGTTCTGCAGGGTTACAccaacagacaaacaaaaaaag

Function

GO:

id name namespace
GO:0006399 tRNA metabolic process biological_process
GO:0006750 glutathione biosynthetic process biological_process
GO:0008033 tRNA processing biological_process
GO:0019184 nonribosomal peptide biosynthetic process biological_process
GO:0017109 glutamate-cysteine ligase complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003467 True 2337 lncRNA 0.35 2 45696834 45700570

Neighbor

gene id symbol gene type direction distance location
XLOC_001465 serhl coding downstream 34060 45650285 ~ 45662774 (-)
XLOC_001464 NA coding downstream 48988 45639132 ~ 45647846 (-)
XLOC_001463 atf7ip coding downstream 60472 45570059 ~ 45636362 (-)
XLOC_001462 grin2bb coding downstream 143232 45372562 ~ 45553602 (-)
XLOC_001461 si:ch211-243a20.4 coding downstream 349441 45341934 ~ 45347393 (-)
XLOC_001467 si:ch211-214c7.5 coding upstream 43548 45744118 ~ 45752261 (-)
XLOC_001468 NA coding upstream 132205 45832775 ~ 45837990 (-)
XLOC_001469 NA coding upstream 138425 45838995 ~ 45839877 (-)
XLOC_001470 pnpla6 coding upstream 166122 45866692 ~ 45920632 (-)
XLOC_001471 NA coding upstream 484648 46185218 ~ 46185851 (-)
XLOC_001458 LO017716.1 non-coding downstream 382958 45307161 ~ 45313876 (-)
XLOC_001453 NA non-coding downstream 600661 45092944 ~ 45096173 (-)
XLOC_001440 BX908740.2 non-coding downstream 1160616 44534625 ~ 44536218 (-)
XLOC_001427 CR385050.3 non-coding downstream 1743207 43952298 ~ 43953627 (-)
XLOC_001480 NA non-coding upstream 1021276 46721846 ~ 46743552 (-)
XLOC_001481 NA non-coding upstream 1049974 46750544 ~ 46791555 (-)

Expression


Co-expression Network