XLOC_001482


Basic Information

Item Value
gene id XLOC_001482
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 46792730 ~ 46833131 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003474
tttttattcatttgtttatctaTCATTAATCAGAAATATAACTTTTAATGTGTTACTTAGGCTATATTTCATGGGGACTAGCTGTCACTCACATCATCCACCAATAGCGAATGACACAATCCAACCTTGCTGATGATCATGCAGGCCCTTGCTACTTTTTTTCCTGAGTTCGTAGCTCGGGTATTCGTTACAATCCTATTCTGAGGTTAAAACAGTTCAAACAGGTCAATTAAAACCAACAAacgtttagttttattttaccgtatactaagtttttttttaaatccaataaCGTTAACTGTTGGGTGGTTTTCTTCAAAGTTAGCCAAAGATCTTCACGTGGCTTTGCATCCTCACCATCCACATCCACAAGACTGATTGAACCCGGCAACCCCAGGCTCGAGGAGGTCTGGCTTAAAACACTGTGGGCTCCTGACAGGCCAATGGATCTGCAGACAGAAGTCTAGCGGGATGGATGGCTGGGCTATTATGTCACTTCCTGGGACATGTCGAGAGCAGACCCAGACAGACATCAGATGGAAACTGCTACCTGCTGGATCCGTCCAGAAGAGGAACTAACTGTGAAGTCTGTGAAGACGTGACTCATCTCCAATCTGC
>TCONS_00002437
gcctttatttatcagaggtcgcaacacagcggaatgaaccgccagcttatccatcatatgttttacacagcggatgccctttctgctgtaacccaatactgggaagTAATATACACTTTGTACCTAAATAACCACATCTATGAGGTAAATGAAACTTTATAACGCACATATACTGCAGTTATAACTCCCCCCACCCCCAGTTAACCGATCTCTGTATGCATTGGATGAAGAAGGCAGGACTATCAAGTCACATTTGCATGTGCAAGCAAGTGTTCATCTAGTCCGAACACAAACAATGGGGAAGTCGTTACACAAACCGTCTGTCCAAGCAGAAAACACTTAAAGACGGTCATTTGTCACGTTGTTGTTTACACCAACTGTGCCTCGCATCTGCCTATCATCTGAGAACTGCGCCTGTGCTCAAGACTGCAGGTCAGTCCGTCCTCGACCAGGTAACAGACATGGGGCTCTGCTCTCTAACACATCAGATCGATGCTTTAAACATCCTAAATGAACTGCGAGATCACGGGACGGGCAGTAATAGAGAGGGAGAGGGCCGGTGTCCGGGTGCTTTGGCGGCCGGTAAAGTGGCCGCTCGCCCGGGCGATGTGATGAAGGAGCCCCGCAGGCTGAAGACGATCGCGGAGAGAGCACGGGAAAACTGCCTTTCGCGACTGCTCGAGATACTGACACAGCTCATATCCATCGAAGAAGACTTCATTAAAGACGGCTCTTACGGGAAGAGTTTGCTCAAGCGTAAGGACAGTGTTGATCTGAAGAACATATGCTTGAGAATGGCTGTTGCGGAAGGTGGTTCTCGCTCGGACAGAGACTTGAGGGAACTTCGAGACTGTCTTCGACTTATCGTCATTAGCCTGCTTGCACATGTGAGAGATGAAAACAACCTGTCATCTACCGTGTCCACTCACAGACTAAGAGAGCTTTCAAACTCCTTCCCTGAAAtctgaaaatctgcagatttcacTGTGTGATTTCTAAGGAACTACCTCAGAAAAATAAGGAGACATTTACTTTTCTTAAGAAACAAACAAGCCATGAACTATCTGTGAATCATCAGTGAATGTAACATTAGCATGATGTTTCAGATTACAAATGAAGGCGTGGAACCtcacaaaaaaagtgttttgcagAGCAATCATGTATATGCTCAGCTTTAAGCTGTATTGTTTATCGTATGCATTAGTCAGTACTCATGCATGCATAAGAATGGCAGAACAACATTCTCTTCGCACATACCAGTATCATGAGTTTGTGTTCGGCTGACTGTACAGGTAAAACAGGTCTGATGCTGCTGAATCCACTTTTAACTCCACGGGTGGGATGATGGCTGTCACACCTCAGGATGGGTCTGGTGTGGCTGCCGTTGTCACCTGATAAACAAAAGGAGTGTGTTTGGTGGAGCAGGGGTGTGTTGGGTAAAAGTGCAATTTGTGTGTTCTAATGTTGAATTGATTATGGCATCACTGTgtaattatgttaaaaataaaaaccattttCAGTGTTACAACCACCCAAGCAGTTCTGAAGATCTGATTATGAATTCCAGGTTTGAGGATTGCAAAATCAATactatttttgctgtttgttcaaatttgAACTGTCTGTAAAAGCTGTGTAGAATCAACTTTTGTCACTAGATGGTGCACAAAACCAGCGTTTATGTAATATAAATGGTCTTGTGCTCCACTACAAACTTTTTTTGGTGTGATGTAAATGAATGAGGAAATTCCCAAAAAGTGTTggataattcattttaattaacacGAATGTATGGATGCAAATGCATTAAAGAAATTGagcaattaaaaacaatttaaatgtttcTAGATAAGGTATTTGGACTCTACTAATGATGATAGACTAAGAACTCGGATTATAAGATGTATAGATTGTAATGTTATGTATTGcacattaaaatgacattaattttttaaaaacttccaaTGATGCATCAAAATAGATTGAAAGtatttaaattgataaaatattattattacaagcaGGGGTgggggcagtatttatgatacatttatttcaaatacatattttaaatacaaaatagtatctAATTTGTATAAGATGGGGTTTAAGAAAATGGGTTCATATCTTGTATCAAAATATGTTAGTGTCTTGTACTTAGGttaatttaaaatactgtaaaatactttgtaagaagatgatgacatcataaaaatgtgGCCTTTGATTGGTGCTTTCTTGCCAAGGCTTGAGATCAGACTAGAAAAATAATATTGAAGAAGTTGATCAATGCTTGGAGTATAGATGGAAATTATGCAATACATATAAAGAAAGTATCAGACAAATAGCAGGGGTAAATTCGGGAGCAAGtcaaataagacaaacaacataaaagTCCCACAGTGGCGATACCTACAAAACATTGTTGGCTTTTTCAAATGCCAGTAGCTGATCTGCAGGTGCTCTTTATAGTTAAATACAAACCTTGACATAGTTAATCAGTATGAGACAAACATAATAATACTTCAATCTACAGACTGGTCAAAAACTCCCAACTGAGTTTTCATGGCAATGAAAACAGATAGCAAATTTTTTTTGGAGATATCATGTTTATATTGTGTATTGAGGAGTacaattgcaaaataaataaataaataaataaaaacatgatttatggaaaTGATTAAAGTGGAGATTTTACATTGAGCAAAGATTTCAATTGCaaaactataaaatataatatataaacatgtataaatataaaaaacttttaAGAGGTATAGTACTATATTCCAACtcattatttgcatttaatgGTTTTTACAATGATCAAAGAAATCCTCTTCAAGACtggactttctgtatgaaatttgtacaaaatctaTACTAAAATCAAAGAGAGTGACATTTTTATGAGTACTTTCTCTTGCACAGTAGAGGTGAATGAGATGGagagaagctgacttaaacttgctcagagaaaagCTTTTGTtatcatgttttgtttgtttcactaaatcagtttaatggtgaaggggTTGATCCAATAGGCTTGTCGAAAGAAGGTTTGAGaaacaaaattgtaaaaagtattttgtagtattttcaaaaaaacacttttttattttgatacatttgctGCTTCTGTATTTTGAAGGTTTTTTGATACATCTAAAGTTGAAGTATTTGGTctcttattttaaaatacatttaaatttttggccAACCCTGATTAATGTAAACTCAACATTAAATTTGACAAATAAACTCAAATGTAAAGTGAATTTCTTTCTGAAATTCTTTCTCTTCTGTTTTCATGAACTAACACGCAGTTCTTGaaacttatgaaattaaaaaaaggaagtatgttaatgtttaaatacttaaaaaaatgctgTGTAAGGCAAATGGAGCGCGTTCAGTTGTGGGATTGTCAATACCAAGTGTGCTCAGTAGAGGACGCCctatacacattttattttcattgactTCACACAATACAAGCGATACAAAATCATTAGATGGCAGCATGTGCCACCTCTTTAACATGGTACTGTAAAATATGTGAAGGTTCCCTTATTTGTGAGTAATTTtgaatttaaagattttaaatgtattcatttaaagaCTATCCAACAGATGAAGAAGTGTTAAATAAAACTCAATTAGCCTATATTAGTCGCCATACAATCACAATGTGTAGCTTTTTGTTTTCGTATAGTGTTTGATGCTAAGTTTATCGATCCGCACACGTcgttgattaattgatttttattcatttgtttatctaTCATTAATCAGAAATATAACTTTTAATGTGTTACTTAGGCTATATTTCATGGGGACTAGCTGTCACTCACATCATCCACCAATAGCGAATGACACAATCCAACCTTGCTGATGATCATGCAGGCCCTTGCTACTTTTTTTCCTGAGTTCGTAGCTCGGGTATTCGTTACAATCCTATTCTGAGGTTAAAACAGTTCAAACAGGTCAATTAAAACCAACAAacgtttagttttattttaccgtatactaagtttttttttaaatccaataaCGTTAACTGTTGGGTGGTTTTCTTCAAAGTTAGCCAAAGATCTTCACGTGGCTTTGCATCCTCACGTaagttttgtaaacaaataatatcATCACGACCAAAGCTGAAACAACAGAAATTTGTCATGTAAAAACCAACAAACATTTAATCTTATcgtgtaacactttttttttaaccatttggaGGTCAAATATTATAGTGACCGACCGATATCTTAGCCGCTTAAGTtaactgttttgtaaataaacaacactaTCTCGAAATCCAACATTAAAAACAACCGAAACGGGTCATTTAAAACCAACAAACGTTTAATTTTACTCGgtttcttttaaaaatcttattgAACGTGATTTTCTTCTACTAGGTTAAAGATCATCAAGTGGCTGTTCATCCTCATGTACGTTTTGTAAACAGATATAGCGACTTCCAAAGTTAAAACAActgaaaattgtattttaaaaaattacaaacgtTTCATATTATCGTGTAACTCGTTTTTTAGGCTATTGGTGTCTCGTCAAATATTTAATTATCTCAAGTGGCCATCCATCTTAACCATGACGTTTTACCGTTTTGTAAAAAAACACTATCGCGACTTTCAACATTAAAAGCAACCAAAACTGGTCAGTTAAAATCAACGAACGTTTCATGTTGTCGTGTAATAttcctacatttttaaaaacccattgaAGATAGGGGCGATACGGTGGCTCAGGTTAGCATTGTCGCTTCACGGCAAGAAGGCTGATccttcaagtcccagctgggccatttggcatttctgtgtggagtttacatgctcTCTTGGTGTGGGTTTCGCCAAAGTCCAAAATACATgcactaggtgaattgaataaactaaattggccatattatatgtgtgtgaattagtgtgtatgaatgtttcccattactgggttccagctgtgtaaacatatgccggataagttggtccattccgctgtggtgactccatgATGAATTACAACTTGCAACTTTTCAAACTTGAATTTTCTCTAACTACTTTTTTCTGCACATTTCATGAGTTTCTTCCTCTaggccaggggtgggcaaactcagtcctggagggccggtgtcctgcacagtttagctccaaccctaatcaaacacacctgcttatagatttcttgtgatcttaaagacactgattagcatgttcaggtgtgtttgactagtgttggaacacaactctgcagggacactggccctcaaggatcaagtttgcccatccctgctctaGGCCCATCACCAACTTTTCTGAAGGAGTGTGTTTGACATTTTGTGTCCTGACTGTCTGAGGCTGCTCTCTCATGACGCTGTTATTTGCTGTTTTTTAGCATCCACATCCACAAGACTGATTGAACCCGGCAACCCCAGGCTCGAGGAGGTCTGGCTTAAAACACTGTGGGCTCCTGACAGGCCAATGGATCTGCAGACAGAAGTCTAGCGGGATGGATGGCTGGGCTATTATGTCACTTCCTGGGACATGTCGAGAGCAGACCCAGACAGATGAGTAAAAGGATGAGTGTTGTGTGAGAGGAGGATCAGAGAAGAGTGCCAGGGCCATCGGGGGTCCGTTAGTGTCTTTGTTACTTCTGCACAGGTTGTGTTTTTAGATATCGGCGACTCTTAAATCTTAAGTCTTCAATATATTTGTAATGAAGACTTGAAGTGT

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0021999 neural plate anterior/posterior regionalization biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003474 False 618 lncRNA 0.43 3 46792730 46828571
TCONS_00002437 True 5759 lncRNA 0.37 2 46826581 46833131

Neighbor

gene id symbol gene type direction distance location
XLOC_001481 NA coding downstream 1175 46750544 ~ 46791555 (-)
XLOC_001480 NA coding downstream 49178 46721846 ~ 46743552 (-)
XLOC_001479 spryd7a coding downstream 74377 46710647 ~ 46718353 (-)
XLOC_001478 kpna3 coding downstream 86091 46666696 ~ 46706639 (-)
XLOC_001477 ebpl coding downstream 128733 46660213 ~ 46663997 (-)
XLOC_001483 agpat3 coding upstream 4718 46837849 ~ 46875493 (-)
XLOC_001484 pdxkb coding upstream 54902 46888033 ~ 46924801 (-)
XLOC_001485 NA coding upstream 104251 46937382 ~ 46952111 (-)
XLOC_001486 BX470235.1 coding upstream 111896 46945027 ~ 46945143 (-)
XLOC_001487 pknox1.2 coding upstream 130862 46963993 ~ 46984142 (-)
XLOC_001471 NA non-coding downstream 606879 46185218 ~ 46185851 (-)
XLOC_001469 NA non-coding downstream 952853 45838995 ~ 45839877 (-)
XLOC_001468 NA non-coding downstream 954740 45832775 ~ 45837990 (-)
XLOC_001492 NA non-coding upstream 291526 47124657 ~ 47161996 (-)
XLOC_001495 NA non-coding upstream 851844 47684975 ~ 47691715 (-)
XLOC_001497 BX005220.1 non-coding upstream 872996 47706127 ~ 47706244 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000119_01655173_01656399 NA coding CI01000119 null 1655173 ~ 1656943 (+)