XLOC_001483 (agpat3)


Basic Information

Item Value
gene id XLOC_001483
gene name agpat3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 46837849 ~ 46875493 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002438
CGGACAGGAAGTCCCATGGCTAGatgcagtgtgtgtgtaaatgtgtatatatacgggtgtgtgtgtgtgtgttttgttgtgcGTGGATGGATAACCACATACGGACACAAAGAGTAGCGATCATTTGAGCAGCACCCCAGAGGCTCAGACACCACCTTCCGACAGCATCGCCATCACACCGAGAAGCAGGAAATCTCCACTGATGACATTTAAGCAGGTCGGTGGTACTAAGTGAAGGGCCGTGTAAAAGAGGGTTGTAGAGAAGAGCCCGCTGTGcagtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgtgtgtggaagggGCTCTCAGTCATGGGTTTGGTGGCGTGGCTGAAGAGTCTGTTCGTCCTGCAGCTCTTGATTGGCTTTGTGTTTGTGGTGAGCGGCCTGATCATCAACTTCACCCAGCTCTGCACCTGCGTGCTGTGGCCCTTCGACAAACAGCTGTACCGCAGAATCAACACCAGACTCTCCTACTCGCTATGGAGCCAGTTAGTGATGTTGTTGGAGTGGTGGTCTGGCACTGAGTGCACGCTGTACACCGATCAGGCCACGGTGGATAAATTTGGTAAAGAGCATGTCATCATCATCCTCAACCACAACTTCGAGGTGGACTTTCTGTGTGGCTGGACCATCTGTGAGAGATACGGCGTGCTGGGGAGTTCAAAGGTTCTGGCAAAGCATGAACTGCTGAAAGTGCCTCTGATTGGCTGGACGTGGTATTTCCTGGAAATAGTCTTCTGCAAGAGGAAGTGGGAGGAGGATAGAGACACTGTCTTCAGTGGACTCAGCCGTCTCAGAGATTATCCAGAATACATGTGGtTCCTGTTGTACTGTGAAGGAACGAGATTTACGGAAAAGAAACACCAGATCAGCATGCAGGTGGCTGAGAGTAAGGGCCTTCCCAAACTGAAGTACCACCTCCTGCCCCGCACCAAAGGATTCACCACCACACTGCAATGCCTAAAGGGAACAGTAAAAGCAGTCTATGATGTCACGCTGAACTTCAAAGACAAACAAAACCCGACTCTGTTGGGGATTGTCAATGGGAAGAAGTACAAAGCAGACTTGAGTGTCAGGCGCTTCTCTGTTGAGGAGATTCCTGACGATGAAAAAGAGTGCGCCGATTGGTTACACAAACTCTACCAAGAGAAGGATGCATTACAAGAGTACTATGAGAAGGAGGGCTGTTATCCCGGCCCAACAATCATACCCAAACGTCGCGTTTGGACCCTGCTGAACTTTCTGTTCTGGGCTACTATCCTGCTTTCCCCGCTTATTAACTTTGCCTGGGATGTGTTTGTCAGCGGCTCTCCCCTCCTCATCATCGGCTTCATGATCTTCCTCATTGTCGCTTCTGTAGCAGTTCGCCGGCTCATCGGAGTAACCGAAGTAAAGAAGACGGGATCCAGCTACGGCAACGTAGAGGCCAAGAAGGAAAACTAATCAACATTTTCACCCTATCGACACCGTGTGGCCACTGTAATGCTGTAATGCTCACCCTGCAGTCCAGCCTCAGGCACAGAGCTGCCCTGTGTGCAGTTATCTttctttttacaaaacaaaaatgtaatttaaaaaaatgaatgaattattaacatCTCTTCAATGCAGCATTGGGAGGTATATAGGGATATAACTATAGATATAACTTAATATGCTAGTCTGTAAACGTACAAATAATTTTATGAACAAAACTAAATGGGAAATAGAGGAGAGGAAGCACTTTCAGTTGCGGATCGATGTGACACGTTTCCCTCCTTTTTAACCCCGCCCCTTTAATGACATAAGCCCCGCCCTCTTTTAACCAAACAAGCTCACATCTTGTCTTAGTTCTTCATTAGTATTTATCATCTCCGGAAGTGCTTTGTAACACTTCGTTCTTTGCATCTACAATATCAAATCCTCCCTTTCACAGTTTGGATCGCCACACTTGAGTCAcctggactgatttttctaagaTCAGAATTTCACATCACGGGCGGTTGAGGAAGACAAACAGCCCAGCTGGTCAGAGAAAAGGCGGCCCCCTACCTAACAAATCAACCGCTGTAGATCACCAATGGGTCTATTGGTCAGCTGAAAACTGTTATGCGACGGCAATAGAAATGGACTGAGCGGAGTTTCTGAGGAAAAGCATGTCTTCTGTAACTTTTCTCCCATTTTCGAGACCTTTTCACAATGGTGTCTTATCCCACTCTGTCACCATTGCATTACCATGTAGATGAATAAGCGATGTTTTCTACTCCTGTCCACATAGAGCATCTCTTTAGTTAGTTTGCAGCTAAATGAAACACCCATGGACCATGATTCAACTGCCCATATCTAG
>TCONS_00002439
CAGTTCATGCAGTAGTGGCTTTGAGGACAGAGTTCAGCTCTTTCCAATCCCACCCTTTCTCTTTTTCCTTCTTTAATCAGTCTCTGTTCATACTGAAGGAAGATTTATTTAACTTAACACACTGCCTGTGGATCTTCAGTTAAGGTCGGTGGTACTAAGTGAAGGGCCGTGTAAAAGAGGGTTGTAGAGAAGAGCCCGCTGTGcagtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgtgtgtggaagggGCTCTCAGTCATGGGTTTGGTGGCGTGGCTGAAGAGTCTGTTCGTCCTGCAGCTCTTGATTGGCTTTGTGTTTGTGGTGAGCGGCCTGATCATCAACTTCACCCAGCTCTGCACCTGCGTGCTGTGGCCCTTCGACAAACAGCTGTACCGCAGAATCAACACCAGACTCTCCTACTCGCTATGGAGCCAGTTAGTGATGTTGTTGGAGTGGTGGTCTGGCACTGAGTGCACGCTGTACACCGATCAGGCCACGGTGGATAAATTTGGTAAAGAGCATGTCATCATCATCCTCAACCACAACTTCGAGGTGGACTTTCTGTGTGGCTGGACCATCTGTGAGAGATACGGCGTGCTGGGGAGTTCAAAGGTTCTGGCAAAGCATGAACTGCTGAAAGTGCCTCTGATTGGCTGGACGTGGTATTTCCTGGAAATAGTCTTCTGCAAGAGGAAGTGGGAGGAGGATAGAGACACTGTCTTCAGTGGACTCAGCCGTCTCAGAGATTATCCAGAATACATGTGGtTCCTGTTGTACTGTGAAGGAACGAGATTTACGGAAAAGAAACACCAGATCAGCATGCAGGTGGCTGAGAGTAAGGGCCTTCCCAAACTGAAGTACCACCTCCTGCCCCGCACCAAAGGATTCACCACCACACTGCAATGCCTAAAGGGAACAG
>TCONS_00002440
GACATTTGTACATGCTAAGTCACATCGAGAGACTCCCTTGTTATAATAGACTGAGAGATACAGCAGTGGCACAGTATGAGAGAGAGAAATTGGAGAAGGTGGCTGGATTTCCTCCAACTGGGTCGGTGGTACTAAGTGAAGGGCCGTGTAAAAGAGGGTTGTAGAGAAGAGCCCGCTGTGcagtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgtgtgtggaagggGCTCTCAGTCATGGGTTTGGTGGCGTGGCTGAAGAGTCTGTTCGTCCTGCAGCTCTTGATTGGCTTTGTGTTTGTGGTGAGCGGCCTGATCATCAACTTCACCCAGCTCTGCACCTGCGTGCTGTGGCCCTTCGACAAACAGCTGTACCGCAGAATCAACACCAGACTCTCCTACTCGCTATGGAGCCAGTTAGTGATGTTGTTGGAGTGGTGGTCTGGCACTGAGTGCACGCTGTACACCGATCAGGCCACGGTGGATAAATTTGGTAAAGAGCATGTCATCATCATCCTCAACCACAACTTCGAGGTGGACTTTCTGTGTGGCTGGACCATCTGTGAGAGATACGGCGTGCTGGGG

Function

symbol description
agpat3 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in central nervous system; digestive system; optic vesicle; pronephric duct; and visual system. Orthologous to human AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2765 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in central nervous system; digestive system; optic vesicle; pronephric duct; and visual system. Orthologous to human AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3).

Ensembl:

ensembl_id ENSDARG00000036549

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002438 False 2358 mRNA 0.47 10 46837849 46875493
TCONS_00002439 False 932 mRNA 0.50 6 46848544 46862190
TCONS_00002440 True 593 mRNA 0.52 4 46854077 46859398

Neighbor

gene id symbol gene type direction distance location
XLOC_001482 NA coding downstream 4718 46792730 ~ 46833131 (-)
XLOC_001481 NA coding downstream 46294 46750544 ~ 46791555 (-)
XLOC_001480 NA coding downstream 94297 46721846 ~ 46743552 (-)
XLOC_001479 spryd7a coding downstream 119496 46710647 ~ 46718353 (-)
XLOC_001478 kpna3 coding downstream 131210 46666696 ~ 46706639 (-)
XLOC_001484 pdxkb coding upstream 12540 46888033 ~ 46924801 (-)
XLOC_001485 NA coding upstream 61889 46937382 ~ 46952111 (-)
XLOC_001486 BX470235.1 coding upstream 69534 46945027 ~ 46945143 (-)
XLOC_001487 pknox1.2 coding upstream 88500 46963993 ~ 46984142 (-)
XLOC_001488 si:dkey-22n8.3 coding upstream 110391 46985884 ~ 46989650 (-)
XLOC_001471 NA non-coding downstream 651998 46185218 ~ 46185851 (-)
XLOC_001469 NA non-coding downstream 997972 45838995 ~ 45839877 (-)
XLOC_001492 NA non-coding upstream 249164 47124657 ~ 47161996 (-)
XLOC_001495 NA non-coding upstream 809482 47684975 ~ 47691715 (-)
XLOC_001497 BX005220.1 non-coding upstream 830634 47706127 ~ 47706244 (-)

Expression


Co-expression Network