XLOC_014860


Basic Information

Item Value
gene id XLOC_014860
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29202043 ~ 29271026 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030280
CCGGATACTGTTTAATGTTGCACTCAAGTTAGCGTGATTTGTATGAACTTTGCTTCACACGGACTGTAAATATGCAAGAGAGTGAGGTCCATCAGAGCAGAGACAGTGTCGTCAGAATGAACAGACGGACTGGTTCTTCTACAGATGTCCCTTATCTCAGCACGCGTGCACTAATGTATCAGCTCTGAGTCTGTCTGCTCTTTGTCTGCAAGAAAACAGCAGTGAATGGGCCAGGCGAGTTTTCCGCTGGTCATATTTTCAAGGTGAGTCTGGAAAGTGCTCCTTGATTACCTTGGTTTTTGGGAAGGAGTCCTGGCAGGATTCCTCTTGCACCTGGAGGTGAGCACATCCTCTCTCTAGGAACATAGTCAAACTGTCAGACCATGAAGGAGAGGTGGAAACAGAAGGAGGGAAACAGTGAAAGCAGGAAAGGGAGTGATGAAAGGCACCACTTTTCTTCCATCTCCCTCCATGACTTTTGTTTTCAAACTGCTCTTTACAAAACTATACAGTACAATTCAATAAGAGCAGTTGGTTTTGAACCTCATAATACCTTTATGGATACATATTGTTTAGCGAATGCAGATTTTCTAATGCATGGAATACCTCCTGTACTGTGTCACAATGCAGTTCTGTGTGACCTTTTATTTACGGTTTaggcagttttttttaatttctattttttttatttttttgtaccttATATAGCTCTGTGggttttttgtgtatttgtgaatACAGAACCCAGAAAggattgactttttattttttttattttgcattttgtccATAGGGAAATTAAATTTTAAAGACAGACCTACTGTgttattaatacaattataaataaaacaaacttttattgtaCCGTCTGCTGACATTAAATCTTaagtttaatttcagttagccaGCCTATGGGCTTCcagttaattgtcatcccatacaaaatcgctgTTTTtaggatctgatttctttaaaaaaaaaaaaaaacatcgctGTTGAATACCTGGCTGAGATATGATATAAAGTTGGT
>TCONS_00030281
CCGGATACTGTTTAATGTTGCACTCAAGTTAGCGTGATTTGTATGAACTTTGCTTCACACGGACTGTAAATATGCAAGAGAGTGAGGTCCATCAGAGCAGAGACAGTGTCGTCAGAATGAACAGACGGACTGGTTCTTCTACAGATGTCCCTTATCTCAGCACGCGTGCACTAATGTATCAGCTCTGAGTCTGTCTGCTCTTTGTCTGCAAGAAAACAGCAGTGAATGGGCCAGGCGAGAGTTTTATATTGCGTGACCAAGATCCCTTGCCACTTCAATCCCCTGCAAATGTCACGACTCTACGGCTCGACTTTGTTCTGGAGGTTCCAGGGGAGGCAACTGGAGCGTTTCACCAAGAGACTGTCACTCAGGTCAAGTGCTGCTAAAGCCAAGAGTCACTATTTCATGTTACCGGTTGGACAGGCGGCGAGCTTCACCCCTGACCACAGAGAGCTTGAATGAATGGAGAAAACAACAGTCTCTGGCACGCCACATTAACAGCAAGGCCATGCAGTATTCATGACTGTAATACCCAGAACATCACTGTCCGTTGTGAGATCTGGGTTCACCTAATGCACAtatgctgtttgtttttttccctctttctGGATGGTTCATTTGCGACTCTCTCTTGTTCTTCCCTAGAGGTTCTTGTCAGAAGCTGTAAAGCTAATAAGCATCTGAAGCATGAATAAAAGAAGACAACACTTAAA
>TCONS_00030282
CCGGATACTGTTTAATGTTGCACTCAAGTTAGCGTGATTTGTATGAACTTTGCTTCACACGGACTGTAAATATGCAAGAGAGTGAGGTCCATCAGAGCAGAGACAGTGTCGTCAGAATGAACAGACGGACTGGTTCTTCTACAGATGTCCCTTATCTCAGCACGCGTGCACTAATGTATCAGCTCTGAGTCTGTCTGCTCTTTGTCTGCAAGAAAACAGCAGTGAATGGGCCAGGCGAGTTCTTTCTGGCTGAACTCAGACAACTGTCAAATAATTAATAAGTAAACAGGAAACATACTGTTTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030280 False 1030 lncRNA 0.38 3 29202043 29271026
TCONS_00030281 False 713 lncRNA 0.46 3 29235706 29271026
TCONS_00030282 True 306 lncRNA 0.44 3 29254416 29271026

Neighbor

gene id symbol gene type direction distance location
XLOC_014859 NA coding downstream 13907 29186529 ~ 29188136 (-)
XLOC_014858 NA coding downstream 79818 29103407 ~ 29122225 (-)
XLOC_014857 NA coding downstream 171244 28922544 ~ 29030799 (-)
XLOC_014856 NA coding downstream 377653 28817621 ~ 28824390 (-)
XLOC_014854 NA coding downstream 412634 28493973 ~ 28789409 (-)
XLOC_014861 e2f3 coding upstream 3359 29274385 ~ 29294457 (-)
XLOC_014862 srfbp1 coding upstream 25165 29296191 ~ 29303788 (-)
XLOC_014863 fndc5b coding upstream 112460 29383486 ~ 29437109 (-)
XLOC_014864 NA coding upstream 479302 29750328 ~ 29796288 (-)
XLOC_014865 CU861666.1 coding upstream 514069 29785095 ~ 29785212 (-)
XLOC_014711 CR382300.3 misc downstream 9473288 19728690 ~ 19728755 (-)
XLOC_014869 NA non-coding upstream 643323 29914349 ~ 29915967 (-)
XLOC_014870 BX547939.1 non-coding upstream 876344 30147370 ~ 30300852 (-)
XLOC_014871 NA non-coding upstream 1041819 30312845 ~ 30316143 (-)

Expression


Co-expression Network