XLOC_014882 (myclb)


Basic Information

Item Value
gene id XLOC_014882
gene name myclb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30805513 ~ 30811161 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029368
TACTCGTTTCAGGTGTCCATTCTGAGCGCAAGCCGCGGCTTGAGAAAGGATCATACAATCGCTATAAAGGGCGAGGACAGAAGCGAAGTTCTCATGAAGAAGCGGACTGCAAATCTAGCCGACATCCTCGCCACTCAACTTATAAACAACAGCCGGATGGTACAAAACCACACCTGGAAAAGCGAACACAACACCGGATTATTAAGCACACAGCTGACGACGCTTCATTAACTTGTTGACATGAAAGCTTTCCGTGCAAAACATTTGTCTGGAGCTCACCGGTAACATTTTCGTGTCTCAAATGACACGCAACATTCTGACTCTGCGCTCTGCATTACGATCTTGATCTCTAAGGAGGACACCAATGCCAGGAATCAGTGCGAGCGCGTCGCGAATTAAGAAGTGGGAGATGGAGGAATACGACCAATATCAGCACTATTTCTACGACGACCACAACTTGGATGAGGACTTTTTCAAATCGACCGCACCGAGCGAGGACATTTGGAAGAAATTCGAGCTCGTGCCAACCCCGCCCATGTCGCCTGTCAGGATACTGGAAGGTAGCGGTCCATCTCCGGGGGACAGGCTGGAGTGGGTGTCCCAGTTTTTGGGACAGGACGACGAGCAGGAGGGGCTGTGCAAACTCAATGCGGAGGAGACTCTGGAGAACCTGAGCTCCATCATAATTCAGGACTGCATGTGGAGCAGTTTCTCCGCAAGTCAGCAGCTGGAGAAAGTTGTCAGCGAGCGGCTGTCCTGCTCGGCGCAGTCCAAACTCTCCGGCAAGGCGCAGTGCGTCCCTGCGGACGTGCCTGCTCTCAACAGCTTGGCGACAGATTGCGTGGATCCAGCAGCTGTCCTTACTTTCCCCCTGAGCAGCAGCTGCAAGAAACAGGTGTCGTCCGGGTCAGAATCTCGCACCGACTCCTCTGATGACGAAGAGATTGATGTGGTGACGGTGGAACATAAACAGAACAAGTCTCGTTTGGTGAACGCCCGCAAGCCAGTGACCATCACTGTTCGTGCAGATCCGCACGACCCCTGCATGAAGCGTTTCCACATCTCCATTCACCAGCAACAGCACAACTATGCCGCCCGCTCTCCTGACAGTTATCCTGAAGAAGAGCCGCCCCGCAAGAAAATCCGTCAAGAAATCGTACAGCCACGATTGGCTTCAACACCTCAAACCCCAGAACGAAAAAGTCCATTACCTTCCCCATCAGTCCCTGCTCAGTCTCCAACTGTCTCTGCTTCGCCAACACATACATCCTACCACCTCAAATCACAACCATCCAGCCCGCAGAGTTCGGACTGTGAGGACACAGACAAGCGGAAGACGCACAACTTTTTGGAGCGCAAAAGACGAAATGACCTTCGCTCACGCTTTTTGGCACTACGGGATGAAATCCCAGGCCTGGTTGATTGTCCAAAGACACCCAAAGTTGTGATCTTGACTAAGGCGACAGAGTATCTCCGTACGCTGCATGTCAGCGACAGACAGAAGGCCCAGGAGAAGAAGCAGCTGAAAAGCAAGCAACAGCAGCTACTAAGGAGACTCGCGGAACTGAAACGTGCATAAATCTCAACCAGTACAGCCATGTTTTCAATAGGAACAATGTAGagctgcatttattattattttttgttgtaaacATGGGGATATTTAACGGAGTAGACTCTATATTTTGAGATTAGTTCTTCAGTTTTCGTTCTTTGCACATTTGCCTTCGCAGTTGTCGGGGTAGGGGAAAGACATACTTACGGAAGCTGAGGTACTGGTGGACCCTACCAAGTTTCAAAACACTTTTCCAAAGAGGTCGTTTTCATTTGTAATTCAAAGATTTAAATCCTGAATGTGTTTAAATTTGTGCATTTATGCTAAAGTATTTGGGCGGGGAagtaatatttcattaaattagcATGCCAATTTAGGCATTATTTGAAATGTAGCAATTTATATGCATGTGTAATTGATCGTCAAGGGTTTTTTGGAGGCAGAATCTTAAATTAGTGTGGTTAAATATTGAAATTCTCCATTTATAGTGCTTTGTTACTCAAAAAAACCTAAAATTAAGGAGAGCTGTGCGCCCCCATTGccacatgatgacagtaagtttAACAGACAGGAAGTTGCATCACTGTTACTTTGTTGCATTAAGTTCCATGAttattttctctctctgtttttgtTGTTCTTGTATATTATTCTTATCTTGAACCTTCAGGACCGTGTCCAGCACAGCCTTGCAGTGTATATAAACTGTGGCATATTCTTTGGACATATGTGTATATAATAACAGTAATGTACAGGACATtgtgtaaaaaaagaaacatgcttTTGTGTTTTGAATAAGAAAATCAGCACTGTTAATagactttattttctatttttctgtcatttgtCCTAAAACTCGGTTGGCCCACCCGCCTTCCCAGGAGTATCTCAAAGTTTCTATTTttgttaagaaaattaaaaaagaaaaaaatcaaaaagttaaataacactatcatttcattttcatcacTAGCCACTTTATGCTGTTTTCACTGCCTATTACCTTGTGTTCTGAAGTTGCTTTTGGCTTGTTATAGCTCTTGTGGCAGAATAAATGCTGAAAGAAGTTTTGTACTAATTATATTTTCTTACGGAATTGATTGTATCATTGTTTTGATTCTATTTAATATGGTTGTACTGGTGGCGTATGCTTGCTTTGGACTTTATAATTTGACGTTTACGCACACTGTCATTTTGTTGAAACTAATAACATAAAAAAGGGTAATGTTTCACAGCAATCGCCAATAATTGATTGAGGTGATTTCTCTTTGTACAAACTCTGGCCATAAAAATGGTCCATAAAAAGGACCTGATAGCAGGAGCATATGCCACCAGTAACccagttttgtttattattttggttttTCACGTTCATCCCATGTTGTCAGGTGTCATACTGGGAGAAGAATGGCAGCAGCGTTGTCTAAGCACTTTGTGTTCTGTACCTCATAAGCCTAAACATTAACTCCAATTtggataaacaataaataaattcagttcaAATCAT
>TCONS_00029369
CAATGCCAGGAATCAGTGCGAGCGCGTCGCGAATTAAGAAGTGGGAGATGGAGGAATACGACCAATATCAGCACTATTTCTACGACGACCACAACTTGGATGAGGACTTTTTCAAATCGACCGCACCGAGCGAGGACATTTGGAAGAAATTCGAGCTCGTGCCAACCCCGCCCATGTCGCCTGTCAGGATACTGGAAGGTAGCGGTCCATCTCCGGGGGACAGGCTGGAGTGGGTGTCCCAGTTTTTGGGACAGGACGACGAGCAGGAGGGGCTGTGCAAACTCAATGCGGAGGAGACTCTGGAGAACCTGAGCTCCATCATAATTCAGGACTGCATGTGGAGCAGTTTCTCCGCAAGTCAGCAGCTGGAGAAAGTTGTCAGCGAGCGGCTGTCCTGCTCGGCGCAGTCCAAACTCTCCGGCAAGGCGCAGTGCGTCCCTGCGGACGTGCCTGCTCTCAACAGCTTGGCGACAGATTGCGTGGATCCAGCAGCTGTCCTTACTTTCCCCCTGAGCAGCAGCTGCAAGAAACAGGTGTCGTCCGGGTCAGAATCTCGCACCGACTCCTCTGATGACGAAGAGATTGATGTGGTGACGGTGGAACATAAACAGAACAAGTCTCGTTTGGTGAACGCCCGCAAGCCAGTGACCATCACTGTTCGTGCAGATCCGCACGACCCCTGCATGAAGCGTTTCCACATCTCCATTCACCAGCAACAGCACAACTATGCCGCCCGCTCTCCTGACAGTTATCCTGAAGAAGAGCCGCCCCGCAAGAAAATCCGTCAAGAAATCGTACAGCCACGATTGGCTTCAACACCTCAAACCCCAGAACGAAAAAGTCCATTACCTTCCCCATCAGTCCCTGCTCAGTCTCCAACTGTCTCTGCTTCGCCAACACATACATCCTACCACCTCAAATCACAACCATCCAGCCCGCAGAGTTCGGACTGTGAGGACACAGACAAGCGGAAGACGCACAACTTTTTGGAGCGCAAAAGACGAAATGACCTTCGCTCACGCTTTTTGGCACTACGGGATGAAATCCCAGGCCTGGTTGATTGTCCAAAGACACCCAAAGTTGTGATCTTGACTAAGGCGACAGAGTATCTCCGTACGCTGCATGTCAGCGACAGACAGAAGGCCCAGGAGAAGAAGCAGCTGAAAAGCAAGCAACAGCAGCTACTAAGGAGACTCGCGGAACTGAAACGTGCATAAATC

Function

symbol description
myclb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system; pectoral fin; pectoral fin bud; pharyngeal arch; and presumptive neural retina. Orthologous to human MYCL (MYCL proto-oncogene, bHLH transcription factor).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5561 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system; pectoral fin; pectoral fin bud; pharyngeal arch; and presumptive neural retina. Orthologous to human MYCL (MYCL proto-oncogene, bHLH transcription factor).

Ensembl:

ensembl_id ENSDARG00000034956

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029368 False 3062 mRNA 0.44 3 30805513 30811161
TCONS_00029369 True 1220 mRNA 0.54 2 30806993 30810328

Neighbor

gene id symbol gene type direction distance location
XLOC_014881 trit1 coding downstream 5431 30722767 ~ 30800082 (-)
XLOC_014880 NA coding downstream 83009 30721012 ~ 30722504 (-)
XLOC_014879 NA coding downstream 181781 30592319 ~ 30623732 (-)
XLOC_014878 hpcal4 coding downstream 240391 30517311 ~ 30565122 (-)
XLOC_014877 bag6l coding downstream 294583 30475281 ~ 30510930 (-)
XLOC_014883 NA coding upstream 20029 30831190 ~ 30835097 (-)
XLOC_014884 si:ch211-194e15.5 coding upstream 86094 30897255 ~ 30904590 (-)
XLOC_014885 BX927219.1 coding upstream 151562 30962723 ~ 30965661 (-)
XLOC_014886 rbbp4 coding upstream 188672 30999833 ~ 31007417 (-)
XLOC_014887 bzw2 coding upstream 196740 31007901 ~ 31042709 (-)
XLOC_014711 CR382300.3 misc downstream 11076758 19728690 ~ 19728755 (-)
XLOC_014876 NA non-coding downstream 335012 30469970 ~ 30470501 (-)
XLOC_014872 NA non-coding downstream 446454 30347509 ~ 30359059 (-)
XLOC_014871 NA non-coding downstream 489370 30312845 ~ 30316143 (-)
XLOC_014888 BX465206.1 non-coding upstream 268165 31079326 ~ 31083973 (-)
XLOC_014901 CR382336.1 non-coding upstream 1519352 32330513 ~ 32330630 (-)
XLOC_014908 CR318628.1 non-coding upstream 1838506 32649667 ~ 32649781 (-)

Expression


Co-expression Network