XLOC_014897 (hey1)


Basic Information

Item Value
gene id XLOC_014897
gene name hey1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 31797567 ~ 31802296 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029393
TCATACGGATGAACGTTTGTCTCACCTGACGCACGCTGAGGATACGCGCTGCTAAACTGTCGAAAAATGAAGAGAAATCACGATTTCAGCTCGTCGGACAGTGAGCTCGATGAGAATATCGAAGTGGAGAAGGAGAGTGCGGATGAAAATGCcggTGCGAATTCTCCACTCGGGTCAATGTCTCCATCCACAACCTCTCAAGTACAAGCAAGAAAACGTCGCAGAGGGATCATCGAGAAGCGCCGGAGGGACCGGATAAATAACAGTTTATCTGAGCTGCGCAGGCTGGTGCCCAGCGCCTTTGAGAAACAGGGCTCAGCTAAACTAGAAAAAGCAGAAATTCTGCAGATGACCGTAGATCATTTAAAGATGCTTCATGCTGCAGGAGGAAAAGGTTACTTTGATGCTCACGCTCTGGCCATGGATTACCGAGGACTGGGTTTCCGCGAATGTCTAGCAGAGACTGCACGTTACCTCAGTATCATCGAGGGCCTGGACAACACAGATCCCCTCCGCATCCGTCTGGTTTCACATCTCAATAGCTACGCCTCTCAGAGAGAAGCTCACTCGGGTTTGGGCCACTTGGCATGGGGTTCTGCATTTGGAACGCCTCCCAGTCACCTGGCCCACCACCTCCTCctgcaacagcagcagcagcagggggCGCCACTGGCGCGCAGTACCAGCAGTCCTCCATCCTCAAACTCATCATCGCCCTCCTCCTCGTCTCCTTCCGCCCCGTCAACAGAGCCCAGGTTGAGCGGGACGGTGATCAGTGAGGCAGGGCAGACGGGACCGCTAAGGGTGCCACCCAGTACCTCCCTTCCCCCAGGCCTCACTCCACCTACTGCATCTAAGCTTTCTCCGCCCCTCCTGACGTCACTTTCAAGCCTGTCAGCGTTTCCCTTCCCACTGAGTGCTTTTCCTCTGCTGTCCCCAAGCTCACTGGGCCCCGCAACGCCCTCCAGCAGCCTAGGGAAGCCCTACAGGCCCTGGAGCATGGAAATAGGGGCCTTCTGAACTCAACACGAACGCTTTTAGAAATGACTTCTTTCTGTAACATCAGACTATTTTGAACAGATGCACAGAAACAGACTTGTACAAAGGGAAGACACGAATACAGATCCACTCTACTAACCAGAACGACTGTGCTTGTCCCATCTCAGCAGGTGATGAGTTTTGGAAATGGTCCAATTTTCACCCAACTGATTTAGTCCTTTTGTCCCTcagggtacactgtaaaaaatatcttccatattttgtgattcatgtttttattttgaagttttccccttttatttatgtttttgaattacattatgggaccttgaatGTTCTTCTAACAGCTTTTAACCTTGAAATtttagaaaaagtgactttttaaaatattttaatactttaaagtgataaattgtctgggttgatgttgtatattacggtacaaaacccttgtaataagctgccagtacatgttctgttattttacagacttatttctctatatattatttcttatatgctgtaaaacccaaaaagtcaaggtaactcaaaccatttaagaaaCCGATTGcgacaaactatttaagtttaaaaactaatgcagatgagtactgtgaacttaatccatttgagtaaacaaagcagtttgagcacagtaaaacccaataaatgaagagaactaaaACGCTCAAAATGCTACAAACCTTTTAAAAAACTTATTccatttaaattgaagtaatgaggtatttaattaactcattagctccaacactgagttcaaatgagtagaatgaactctcagtcaattttgagttaactacactcgtTTCACTTGCTAaagtgactgttgggttttacagtgtaaatttattttttcaaactcctaaaatgtcaataaaagtcactttgttaaactgtaaagctgaatttttaacatcaaaagtcgccagagcagagatcaaggtcccataatgcacaaccgtaaataaactgaaaactgaatcacaaaatacagaaactgttaattaacaaatagtttttacagtgtacgtttACTCGACAGTGATGTACtaaaaattgtgatttattttttaaaatttggcaTACTGAAAACAGTGTTGTCAAAATGATTCCCTTTCATGTGGATCtgcaaaaacaactaaaaacggCGCATTGTACAgtacatgccaggccagtagttggcGATGTCGCTTTGTAAATAAACACTACGCGACTGCGCACATTTTTGATTGTTTGCATTTTCACGCCCCTAAAACACTGCTGTCGTGTAAAGTGAACTTaacacttgttttaaaccttccAAAATGCAATAACCCTTCAGTTTTTGGTTGAAAACAGTGTCCTGTAAGCACACCCTCAGTGGAGAAATTATACAAAATGTCACATTTTGAATACTGCGCCCTCTAGAGGTCCCATCTATGATTTGTTCATAAAAAACCATAATAAACAGAAAGTTATTCCTTTTGAAGGGTACATACTTCTattgtggcggttcattccgctgtgatgacccctgaaaAATGAGAggctaagcagaaggaaaatgattgaataaatacttGTATGGTTAAAGACAAATGTGAGCACTAGAGGGCGCAGTATATAAAATGAGAaccaggcagagagagagaggtcaTTTGAAGCCAAATGCATCACTGAATTGATGTTAAACTCAAACCAGATGCTCATTTTATAACAATAAAGATAGTTCAGGAACAATTAGTCCACATGCAACAAAAATTAGCCTCTTAACTCCGGGAATTACTttgaatgtttagaaatatgttggaaAAACCTATGCAATGACATTGATGTTTTGGAAATTTCCCTTCACAAAAATATGTGAAATCTATGCAACCTATGTATTCCTCAGCTGAACTCGATGagtactttatttttataaagattATACGTCCAGTGACctgcagtgtgtttttttttttagatgtaatgAATTTGCTGTTTGCAGAAATGGATCTTTATCGAGACAATCTAGATAGACAATCTCTCAGAGCTGCTCTAATTTAATTGTAGCGAAGGCACTATTAGGTTTGTTAATAGAGAAAATGTGCATATGTTTGCCCTTTATGCTCaaatcatctctctctctctcttacagtTATCTGTACTTGAGGAGTGTTTTGGAAAACCAGTTTTTTTATGGCAATAGGGATTTTACACTGGCAAATCAGATAAGATTAGGTGAATAGATAGTACTGGAAGAGATGATGTGGTACTGTGCCTGTCCCTCACTAACCTGTGTGACTTTCCTGTAATAAAATATGTGTAGCTAACAACTCTG

Function

symbol description
hey1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including germ ring; mesoderm; musculature system; nervous system; and pharyngeal arch. Orthologous to human HEY1 (hes related family bHLH transcription factor with YRPW motif 1).

GO:

id name namespace
GO:0072359 circulatory system development biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007275 multicellular organism development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000607-70 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including germ ring; mesoderm; musculature system; nervous system; and pharyngeal arch. Orthologous to human HEY1 (hes related family bHLH transcription factor with YRPW motif 1).

Ensembl:

ensembl_id ENSDARG00000070538

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029393 True 3322 mRNA 0.41 5 31797567 31802296

Neighbor

gene id symbol gene type direction distance location
XLOC_014896 si:dkeyp-120h9.1 coding downstream 31952 31743104 ~ 31765615 (-)
XLOC_014895 ripor2 coding downstream 89675 31593453 ~ 31707892 (-)
XLOC_014894 C19H6orf62 coding downstream 213123 31579391 ~ 31584444 (-)
XLOC_014893 tdp2b coding downstream 221246 31568992 ~ 31576321 (-)
XLOC_014892 necab1 coding downstream 274890 31437689 ~ 31522677 (-)
XLOC_014898 zbtb10 coding upstream 76158 31878454 ~ 31900893 (-)
XLOC_014899 znf704 coding upstream 154238 31956534 ~ 32042105 (-)
XLOC_014900 pag1 coding upstream 246083 32048379 ~ 32150214 (-)
XLOC_014901 CR382336.1 coding upstream 528217 32330513 ~ 32330630 (-)
XLOC_014902 gmpr coding upstream 670700 32472996 ~ 32487469 (-)
XLOC_014711 CR382300.3 misc downstream 12068812 19728690 ~ 19728755 (-)
XLOC_014888 BX465206.1 non-coding downstream 713594 31079326 ~ 31083973 (-)
XLOC_014885 BX927219.1 non-coding downstream 831906 30962723 ~ 30965661 (-)
XLOC_014883 NA non-coding downstream 962470 30831190 ~ 30835097 (-)
XLOC_014880 NA non-coding downstream 1075063 30721012 ~ 30722504 (-)
XLOC_014879 NA non-coding downstream 1173835 30592319 ~ 30623732 (-)
XLOC_014908 CR318628.1 non-coding upstream 847371 32649667 ~ 32649781 (-)
XLOC_014919 BX957357.1 non-coding upstream 1570068 33372364 ~ 33372694 (-)
XLOC_014920 NA non-coding upstream 1980487 33782783 ~ 33786703 (-)
XLOC_014924 CU928445.1 non-coding upstream 2175582 33977878 ~ 33977994 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_07599184_07601743 HEY1 coding CI01000054 null 7597906 ~ 7603125 (+)