XLOC_014904 (fuca1.1)


Basic Information

Item Value
gene id XLOC_014904
gene name fuca1.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32495419 ~ 32500373 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029403
GTCACATGAGTGTTGTCATATGATAAACCAGGAAATACAAACTGGTTGCTCTGGTTTTCTGCAACGGCATTATGTTTGGTCCCAAGGTAAATCGACCGACATCCCTTTGTAGTGCAGAAGTCATACTGACAGTCGTGATAGCGAGTCACTTTAGCTGACCACAGTGAGCGCAATCACGTCTGCAAACATGCAGGTGACTCGCAGTCAGATATCGCTGTTTCTTTGTCTGCTATCATGCGCGTCAGTTATCGGAGCTCGATATACTCCTGACTGGACAAGTCTGGACTCCAGACCTCTGCCTGGATGGTACGACGAGGTGAAGTTCGGCATCTTCGTTCACTGGGGGGTGTTTTCGGTGCCCGCTTTCGGTAGCGAGTGGTTCTGGTGGTACTGGAAAGGCGCACAAAATCCCGATTACGTCCAATTCATGATCAAAAACTACCCTCCAGGTTTCAGCTACGCGGATTTTGCGCCTAATTTCCACGCGCAGTTTTTCGACCCTGACGCTTGGGCTGATATCTTCGAAGCTTCCGGAGCGAAATATGTCGTCCTTACATCGAAACACCACGAAGGCTTCACAAATTGGGGATCCCCGACCTCCTGGAACTGGAATTCGGTTGATGACGGACCTCACAGGGATCTGGTTGGAGATTTGGGCAATGCTATAAGAAAGAAGGGCTTGCATTATGGACTCTATCACTCTCTGTACGAATGGTTCAACCCCCTCTACCTGAGTGACAAACAATCTGGCTTCAAGACCCAGGAGTATGTTGCAAGAAAAGCAATGCCTGAACTCTACGATCTGGTCAGCAGGTACAAGCCAGACTTGATTTGGTCTGACGGCGACTGGGAAGCGCCGGACACTTACTGGAACTCTACAGAATTCCTTGCCTGGCTCTACAACGACAGTCCAGTCAAAGACATAGTGGTGGTCAATGACAGATGGGGAAACGGATGTTACTGCAAACATGGAGGTTACTACAACTGCGCCGACAAATTCAATCCTCAAAAGCTTCTCAATCACAAGTGGGAGAAATGCCAATCAGTGGACAAAATATCATGGGGGTATCGCAGAAATATGAAGCTGAGTGAGCTGATGGATCTGCCAGAGCTTGTACAGGACCTGGTCTACATTGTGGCTTTAGGTGGGAATTACCTTTTGAATATAGGGCCCACAGCAGATGGTGTGATCGCTCCTGTGTTTGAGGAACGTCTCAGAGGAATCGGAGCCTGGCTGCAGATCAACGGTGAAGCCATCTATGGAACGAGCTTTTGGAGAGTTCAAGCTGAGAATGCCACTGTTCCTGTCTGGTATACAGCAAAAAAATCCACTGTGTATGCGATCTTCACCACCAATCCTATGCAGAACACCTTTCAGCTTTCTGCGCCCAACACCACCGACAGCACAGTGGTGACTTTATTGGGGAGTCCTAAACCTTTGAAATGGGCTCCTCTGCAGTCATCAGGACTGATGGTGGTTCTGCCTGAGCTGCCTTTCTCACCCGCTTATGCCTGGACTCTCAAGATGGAAGGGGTGGCatagtgctttaaaaacaattttgattttaatataatttgttttagggcagatttgtataaatattttttttacaatggattACATGATTTCATTAATCAGTAAAAATTACAGACGGAATGACAAATTGTGATTTGTTAATTTTCGGGAGGGTTTTCTAGACGCTAATGCCATTTTATGATGCATCTAAAACTGACGAAATCCTCAAGTTGTCAATAAACTTATTCATTCTTTGTAA

Function

symbol description
fuca1.1 Predicted to enable alpha-L-fucosidase activity. Predicted to be involved in fucose metabolic process and glycoside catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosome. Is expressed in several structures, including EVL; epidermis; periderm; sensory system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in fucosidosis. Orthologous to human FUCA1 (alpha-L-fucosidase 1).

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016139 glycoside catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0006004 fucose metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004560 alpha-L-fucosidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7434 Predicted to enable alpha-L-fucosidase activity. Predicted to be involved in fucose metabolic process and glycoside catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosome. Is expressed in several structures, including EVL; epidermis; periderm; sensory system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in fucosidosis. Orthologous to human FUCA1 (alpha-L-fucosidase 1).

Ensembl:

ensembl_id ENSDARG00000035890

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029403 True 1775 mRNA 0.46 8 32495419 32500373

Neighbor

gene id symbol gene type direction distance location
XLOC_014903 fuca1.2 coding downstream 1553 32488572 ~ 32493866 (-)
XLOC_014902 gmpr coding downstream 7950 32472996 ~ 32487469 (-)
XLOC_014901 CR382336.1 coding downstream 164789 32330513 ~ 32330630 (-)
XLOC_014900 pag1 coding downstream 345205 32048379 ~ 32150214 (-)
XLOC_014899 znf704 coding downstream 453314 31956534 ~ 32042105 (-)
XLOC_014905 zbtb8b coding upstream 5374 32505747 ~ 32518556 (-)
XLOC_014906 zgc:91944 coding upstream 71354 32571727 ~ 32600868 (-)
XLOC_014907 hpca coding upstream 121804 32622177 ~ 32710922 (-)
XLOC_014908 CR318628.1 coding upstream 149294 32649667 ~ 32649781 (-)
XLOC_014909 nt5c1aa coding upstream 266050 32766423 ~ 32804535 (-)
XLOC_014711 CR382300.3 misc downstream 12766664 19728690 ~ 19728755 (-)
XLOC_014888 BX465206.1 non-coding downstream 1411446 31079326 ~ 31083973 (-)
XLOC_014885 BX927219.1 non-coding downstream 1529758 30962723 ~ 30965661 (-)
XLOC_014883 NA non-coding downstream 1660322 30831190 ~ 30835097 (-)
XLOC_014880 NA non-coding downstream 1772915 30721012 ~ 30722504 (-)
XLOC_014919 BX957357.1 non-coding upstream 871991 33372364 ~ 33372694 (-)
XLOC_014920 NA non-coding upstream 1282410 33782783 ~ 33786703 (-)
XLOC_014924 CU928445.1 non-coding upstream 1477505 33977878 ~ 33977994 (-)
XLOC_014927 NA non-coding upstream 1687819 34188192 ~ 34230285 (-)

Expression


Co-expression Network