XLOC_001491 (mhc1zea)


Basic Information

Item Value
gene id XLOC_001491
gene name mhc1zea
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 47116121 ~ 47122141 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002454
GAAATAGACCAAATACATGTGCCGCGACCTCAAAAGGCTGCAAAATGGCTGTTTTTGCCGCTCTGTTTTCGGTAGTGATGCTCTTTACTGTTGTACCAGCCTGGACCGAAAAACACTCCCTCTACTACATATACACAGCTTTATCCAGACCTGTCCACCTGCCGGGCATCTATGAATTCACTGCAATGGGTTTGCTTGATGACAGACAGATTGACTATTACAACAGCCAAGAGCAGAAGAAGATTCCCAAACAGCACTGGATGAAAGAGAAAATGCAGGAAGATTACTGGGAAAAAGGCACCCAGTCCAGAAAGAGCAAAGAACAGTGGTTTAATGTGAATCTCAAAATTCTGATGGAACGAATGAGACACAATAATAATTCAGATGTTCATGTTCTTCAGTGGAGACATGGTTGTGAAATTGACAGTCAGGGCAATGATGTCCGATTTTCTAAAGGCATTGATGAGTACAGCTATGATGGAAGAAACTTCCTGGCCTTTGATGATGCGGATTCTCAGTGGGTTGCTCCAGTGGAAGAAGCTCTTCCAACCAAGAGGAAATGGGATAATGTGCCCATCCTAAATCAGTACACCAAGGGCTACCTGGAAAAAGAGTGTGTGGACTGGCTCAACAAATTCAGAGAATATGGAGATCAGGAGCTTAGAGAAGGCTCTCCCCCAGATGTTCATGTGTTTGCGAAGAAGATTATCAGTGGCAAAGCCAAGCTAAAACTTACCTGTATGGTCACTGGATTCTACCCCAAAGATGTGATTTTGACCATAAGGAAATACCGCACGGCACTGTCTGATAATGAGGTAGAATCTTCAGGAGTTAGACCAAACCCTGATGGGACCTTTCAGCTGAGAAAGAGCACTAACATCTATGAAAAAGCAGAATATGACTGTTATGTGGCCCACAGAACCCTCAAGGAACCAATTATCAAAAAATGGGATGGGGAGTGCCAGGACTGCTCTTCAGGAACTCCCATAGGTACGATTTTTGGAGCATTAATCGGAGTTTTGTTAGTGCTGGCAGTCATTGGTGGAGCAGTTTATTTTCTAGCAAATACAAGAATGGGATGGAGAAATGCTCTTTGATATCAACTATCTCTGGAAACAAGGAGGAGAAACACTCTTTGCTACCTGGTTCAGcggaccattttttttaaattcaattttaaataagtacatgCTTTCTTATTATTGCACTAAAATCAAGTTGCTTGCTTCATTAAATGTCCTGCTGCAAATTTGTCACAGtttacaattataattttttttttttaagtggaccAAGATTTGGgcgtattgttttaaaaaataacatgcacagcttgcttttacattttattgacttttccagcatatgttttacgcagtggatgcccttccagctgcaatccaaaaccgagaaacacccatacacttacatTTACACACCAGTCCcctcggccaatttagttcattcatttcacctatagtacttgtcttttggactgtgatggaaaccagaccacccagaggaaaccaatgccaacacaggaagaacatgcaaactccacactgaaatgccaaatGACGCAGCTgtggcttgaaccagtgacctagctgtaaggcgatcgtgctacccactgcgccatcatgctgctgctctatatatatatatatatatatatatatatatataaataatgtcttTTATAGCTGCAAAATTTTTATGAagtaaatatgtttttgttttcatttatttaataaataatgtattttctattTAGGCTACTTAAATTTCTATTCGGGCTACCAAAAACTGAAAAGTGCCTGCCCGAATGAATATTTCTTCATAATAAGATGCATCAgtgttataattaatatttagatgatatttatttatagtgcCTTTACAAAAACTGATGAATACCACTGTTTGTACTGTTAGGACTGTCCTCATGTACATATTATTTTTGGTGTTTCTGTTTAAGTCTGTTAATCTGTACAATCATTTGTCTTAATATGGTTTATTGAAATAAAGTTGgtgttatattcacaca
>TCONS_00002455
GCCGCTCTGTTTTCGGTAGTGATGCTCTTTACTGTTGTACCAGCCTGGACCGAAAAACACTCCCTCTACTACATATACACAGCTTTATCCAGACCTGTCCACCTGCCGGGCATCTATGAATTCACTGCAATGGGTTTGCTTGATGACAGACAGATTGACTATTACAACAGCCAAGAGCAGAAGAAGATTCCCAAACAGCACTGGATGAAAGAGAAAATGCAGGAAGATTACTGGGAAAAAGGCACCCAGTCCAGAAAGAGCAAAGAACAGTGGTTTAATGTGAATCTCAAAATTCTGATGGAACGAATGAGACACAATAATAATTCAGATGTTCATGTTCTTCAGTGGAGACATGGTTGTGAAATTGACAGTCAGGGCAATGATGTCCGATTTTCTAAAGGCATTGATGAGTACAGCTATGATGGAAGAAACTTCCTGGCCTTTGATGATGCGGATTCTCAGTGGGTTGCTCCAGTGGAAGAAGCTCTTCCAACCAAGAGGAAATGGGATAATGTGCCCATCCTAAATCAGTACACCAAGGGCTACCTGGAAAAAGAGTGTGTGGACTGGCTCAACAAATTCAGAGAATATGGAGATCAGGAGCTTAGAGAAGGCTCTCCCCCAGATGTTCATGTGTTTGCGAAGAAGATTATCAGTGGCAAAGCCAAGCTAAAACTTACCTGTATGGTCACTGGATTCTACCCCAAAGATGTGATTTTGACCATAAGGAAATACCGCACGGCACTGTCTGATAATGAGGTAGAATCTTCAGGAGTTAGACCAAACCCTGATGGGACCTTTCAGCTGAGAAAGAGCACTAACATCTATGAAAAAGCAGAATATGACTGTTATGTGGCCCACAGAACCCTCAAGGAACCAATTATCAAAAAATGGGATGGGGAGTGCCAGGACTGCTCTTCAGGAACTCCCATAGGTACGATTTTTGGAGCATTAATCGGAGTTTTGTTAGTGCTGGCAGTCATTGGTGGAGCAGTTTATTTTCTAGCAAATACAAGAATG
>TCONS_00002456
acggcttgccatacggtACTGGAAGGGGAAATAGACCAAATACATGTGCCGCGACCTCAAAAGGCTGCAAAATGGCTGTTTTTGCCGCTCTGTTTTCGGTAGTGATGCTCTTTACTGTTGTACCAGCCTGGACCGAAAAACACTCCCTCTACTACATATACACAGCTTTATCCAGACCTGTCCACCTGCCGGGCATCTATGAATTCACTGCAATGGGTTTGCTTGATGACAGACAGATTGACTATTACAACAGCCAAGAGCAGAAGAAGATTCCCAAACAGCACTGGATGAAAGAGAAAATGCAGGAAGATTACTGGGAAAAAGGCACCCAGTCCAGAAAGAGCAAAGAACAGTGGTTTAATGTGAATCTCAAAATTCTGATGGAACGAATGAGACACAATAATAATTCAGATGTTCATGTTCTTCAGTGGAGACATGGTTGTGAAATTGACAGTCAGGGCAATGATGTCCGATTTTCTAAAGGCATTGATGAGTACAGCTATGATGGAAGAAACTTCCTGGCCTTTGATGATGCGGATTCTCAGTGGGTTGCTCCAGTGGAAGAAGCTCTTCCAACCAAGAGGAAATGGGATAATGTGCCCATCCTAAATCAGTACACCAAGGGCTACCTGGAAAAAGAGTGTGTGGACTGGCTCAACAAATTCAGAGAATATGGAGATCAGGAGCTTAGAGAAGGCTCTCCCCCAGATGTTCATGTGTTTGCGAAGAAGATTATCAGTGGCAAAGCCAAGCTAAAACTTACCTGTATGGTCACTGGATTCTACCCCAAAGATGTGATTTTGACCATAAGGAAATACCGCACGGCACTGTCTGATAATGAGGTAGAATCTTCAGGAGTTAGACCAAACCCTGATGGGACCTTTCAGCTGAGAAAGAGCACTAACATCTATGAAAAAGCAGAATATGACTGTTATGTGGCCCACAGAACCCTCAAGGAACCAATTATCAAAAAATGGGGTAATCAAAGCATACAGAAAAAGCACCttgtaaaaATGGGGAGTGCCAGGACTGCTCTTCAGGAACTCCCATAGGTACGATTTTTGGAGCATTAATCGGAGTTTTGTTAGTGCTGGCAGTCATTGGTGGAGCAGTTTATTTTCTAGCAAATACAAGAATG
>TCONS_00002457
acggtACTGGAAGGGGAAATAGACCAAATACATGTGCCGCGACCTCAAAAGGCTGCAAAATGGCTGTTTTTGCCGCTCTGTTTTCGGTAGTGATGCTCTTTACTGTTGTACCAGCCTGGACCGAAAAACACTCCCTCTACTACATATACACAGCTTTATCCAGACCTGTCCACCTGCCGGGCATCTATGAATTCACTGCAATGGGTTTGCTTGATGACAGACAGATTGACTATTACAACAGCCAAGAGCAGAAGAAGATTCCCAAACAGCACTGGATGAAAGAGAAAATGCAGGAAGATTACTGGGAAAAAGGCACCCAGTCCAGAAAGAGCAAAGAACAGTGGTTTAATGTGAATCTCAAAATTCTGATGGAACGAATGAGACACAATAATAATTCAGATGTTCATGTTCTTCAGTGGAGACATGGTTGTGAAATTGACAGTCAGGGCAATGATGTCCGATTTTCTAAAGGCATTGATGAGTACAGCTATGATGGAAGAAACTTCCTGGCCTTTGATGATGCGGATTCTCAGTGGGTTGCTCCAGTGGAAGAAGCTCTTCCAACCAAGAGGAAATGGGATAATGTGCCCATCCTAAATCAGTACACCAAGGGCTACCTGGAAAAAGAGTGTGTGGACTGGCTCAACAAATTCAGAGAATATGGAGATCAGGAGCTTAGAGAAGGCTGTGAgtttatatacagtacagcattaaTTTGGTTATTGTTATAAAACTGATTGATTAAACAATGTACTTGTGATTTCAGCTCCCCCAGATGTTCATGTGTTTGCGAAGAAGATTATCAGTGGCAAAGCCAAGCTAAAACTTACCTGTATGGTCACTGGATTCTACCCCAAAGATGTGATTTTGACCATAAGGAAATACCGCACGGCACTGTCTGATAATGAGGTAGAATCTTCAGGAGTTAGACCAAACCCTGATGGGACCTTTCAGCTGAGA

Function

symbol description
mhc1zea Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Is expressed in gill; intestine; kidney; liver; and spleen.

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-176 Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Is expressed in gill; intestine; kidney; liver; and spleen.

Ensembl:

ensembl_id ENSDARG00000001470

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002454 False 2047 mRNA 0.39 7 47116121 47122114
TCONS_00002455 False 1020 mRNA 0.44 5 47120033 47122058
TCONS_00002456 False 1138 mRNA 0.44 5 47120033 47122141
TCONS_00002457 True 960 lncRNA 0.43 3 47120331 47122129

Neighbor

gene id symbol gene type direction distance location
XLOC_001490 setd4 coding downstream 1802 47106268 ~ 47114319 (-)
XLOC_001489 itsn1 coding downstream 26303 46999441 ~ 47089818 (-)
XLOC_001488 si:dkey-22n8.3 coding downstream 126471 46985884 ~ 46989650 (-)
XLOC_001487 pknox1.2 coding downstream 131979 46963993 ~ 46984142 (-)
XLOC_001485 NA coding downstream 164010 46937382 ~ 46952111 (-)
XLOC_001492 NA coding upstream 2516 47124657 ~ 47161996 (-)
XLOC_001493 mhc1zca coding upstream 18647 47140788 ~ 47151790 (-)
XLOC_001494 gja5b coding upstream 292593 47414734 ~ 47431453 (-)
XLOC_001495 NA coding upstream 562834 47684975 ~ 47691715 (-)
XLOC_001496 neurl1aa coding upstream 579783 47701924 ~ 47771742 (-)
XLOC_001486 BX470235.1 non-coding downstream 170978 46945027 ~ 46945143 (-)
XLOC_001482 NA non-coding downstream 282990 46792730 ~ 46833131 (-)
XLOC_001481 NA non-coding downstream 324566 46750544 ~ 46791555 (-)
XLOC_001480 NA non-coding downstream 372569 46721846 ~ 46743552 (-)
XLOC_001497 BX005220.1 non-coding upstream 583986 47706127 ~ 47706244 (-)
XLOC_001498 NA non-coding upstream 671599 47793740 ~ 47828692 (-)
XLOC_001500 NA non-coding upstream 1668478 48790619 ~ 48791377 (-)

Expression


Co-expression Network