XLOC_015023


Basic Information

Item Value
gene id XLOC_015023
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43272241 ~ 43282798 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030341
TTGTCAGCATCTCTTCAggcaacaaataaaaaagcacacaGATTTCGAGTGACACAGACCTTGCTTTAATACAGACAGTTCCACTGTACAGTACGAAGTTATTTACATTCTTCGATGTAAATGAcctatttacaaacaaaaaacaacaacagatgaGCCGTGAAACATGGGTGTGAGTCAtaacttaaataaatacataacagtCAGAGATCGGACGCCACTGGAGTCCAAATGACATGATATGAATCAACTACTGAATCTAaatgagaaaacacacacacacacacgcttcatGTCTACATATAATAATACACCACACagactcactctctctctctcacatacacacctGAAGTGTGCAAACATGTTAAAGGGTGTTTCATCCCAGAAGAGTTTGTAAAAAAGCATTCAGAAACACAATAGAAAACATTTCTATCGCTCGTCAAGGCTGTGAGGTTGTGTACTATATATGGCATAATGGATAATCGAGGccagagtgtcttctttccaattaTACATCAACTGTGAATGTTGACCAAATTATTCCAATagcatctggatgcagccttcatgatgcaagctgagactgcatcactcagcgatgcaatgtcagacacaatgcactcaatggagtgagtgacgtcactgtgatgggcggggttaggggtggggttagatgagcGCATTAAGGCCCTATTTACTCTAATGCACTTTAGTTTGAAAACAgttaagttttgctatggttacaccatccgtccacactacgccggagtttgcGAGCGCCGAAAATGAACGTTTTttaaacgctggagaggctgttttcattctgaaacgctgctgctctgtctcagtgtggatgtgggaaaacggagacatctgaaacggaggcggggctgctgacattcgctatctgattggggcttttgtgtcattgcgtattttccccttattcgtcaagcccctatcacatgactataacacatggctttaacgctaccggaagacagcagaccagccttcactgtaaacaacaacacggacacagaaacattagcgttgtttgcactattgtctgttttaggtgccattgtgcagttattcatttgttacgtttagtaacaactcgacctcgtcgtctgtccacaaaaatacctctcttgctttctttgccatcgcgttcattgttcagccggcgtttgttgactaacaataaccaaatgccgagcgagacacatgcttcctgtttatactagaacgcgcctGCCCAGAGTGCGCGCATGGTcatgtgatatacgtttttggtagcgtagtgtggacggagatatgttctgaaacgctgggtgaaacgctagtgtggatcgtttttgatctaaaatgaattagcatgtttctagcatgaattagcatgatgttagcatgtttctagcatgaattagaatgttgttatcatgtttctagcatgcattagcgtgttactagcatgattctagcatgaattagcatgttactaacatgattctagcataaattagcatgttgtaagcatgaatatagcatgaattagcatgttactagcatgattctagcataaattagcatgtactagcatgattctagcatgaattagcatgttactagcatgattctagcataatttAACATGtactagcatgattctggcatgaattagcatgttactagcatgattctagcataatttAACATGtactagcatgattctggcatgaattagcatgttactagaatggttctagcataaattagcatgtactagcatgattctagcatgaactagcatgttactagcatgtttctagcatgaattagcatgttgttagcctgtttctagcatgaattagcatgttgttagcatgtttctagcatgaattagcatgttgctagcatgaattagcatgtgactaacATGATCCTAGCATAAATTAACATGTACTGggatgattctagcatgaattagcatgttactagcatgattctagcatgaattagcatgttgttagcatgtttctagcatgaatagcatgttgttatcgtgtttctagcatgaattagcaagttgctAGCATAATTAGtatgttactaacatgattttagcataaattagcatgttgttagcatgattatagcttgaattagcatgttactagcaagattctagcataaattagcatgtactgggatgattctagcatgaataagcatgttactagcatggttctagcatgaattagcatgttgttagcatgcttctagcatgaattagcatgttgttagcatgtttctaacatgaattagcatgttttcaaactcaaacgcactagtgtaaacggggcctaaagagcactggatgcagctcagattgcactgtgCTAGGTCAGCATCCAGACTCCCGTcaattattcagcaactgttaatgttttagcttgggaaggtcatttttgagaaagtgcctctgacggTGAGGGAGAGAAGGACACCGATATAGTCTCAGAAAGCCTTCTCATTTTGCCTGCTGCCTTCATCATAATTTAAAACACATAAACTCATGAGACACTTGGCTTTCAAGTCGTATACTTTCTAGGACATCACATTAATGTGTTCCTGTGTTTCTATATGGAAAATCAAATATTGAGCACAATACAATTGTGTTtctcatgacttcataatgtataactttttatattgtaACACGTAACTTccccttttaccacagtaaagctcaaagtgtcttctgtCCGATGACACCCAGTTTGTGTTTGTAGCTGACTGGAGTCAGCAGCTGCTACTATTTAAACTTCGGTAGGTGTAAATCTCAAAATCGAGGTTAAAATCGTAAGTTGTTGACCTGCGAAAATCGGAAgaacacacaaagtgctgcagaaACACTGGTGAATGTAAAGGTATAGACACATGTTCATCTAGTAGCCTTGTTCAACTTAGTTTGAGTTGTTATAGCGCTCAGCTCTCTCTTAATTCCTTGAACTCACAATCATGAGCTCAACAAAGCAGTCAATAGTCATATAAACATAATGAGACGCTTCGAAATACTGCAGCAGTCCTGCTTCACTCTGACTGTCAACTAGAttaaaggtgcagcaggtgatGGTCTTCAGATacatgtgttgttgtgctggctgaaactctcttcacattccaatagttaCAAGATACTAAAGTTGGAGGACAAACTTCATGGTggtttttaagtgtaaataactgtattttatgaattttcattttatttatgaagTTTGAAACAGTCAGCATAGATAAGTACatatatgttagcatgtttctagtatagattggcatgtttcttggtaggtggttgctagggtgttctgagtggttgctaaagcgttgctaggttgttgctaaggtgttgctaggcggttgctaaagtcttctgagtggttgctaggcagttgctaacataatatagtatgattctagcatgaatttgcatgttactagcatgattctagcatgacatAGTATGCtactagcatgcttctagcataaattagcatgttgttagcatgattatagcatgaattagcatggcATGGTACTAGCatgttctagcatgaattagcaagttactagcataattctagcatgaattagcatgttactagcatgtttctagcataaattagcatgttgttaaaatGATTATAGAATgtattagcatgtaactagcatcaattagcatgttgctagaatgtttctagcataaattggcatgttgttagcatgattatagcatgaattagtatgctactagcatgcttctagcataaattagcatgttgttagcataaattagcatgttgttaaaatgattataaaatgtattagcatgttactagcatgaattatcatgttactagaatgtttctagcataaattggcatgttgttagcatgattctagcatacattagcatgttgttagcatgattatagcataaattagcatggtatggtactagcatgattctagcatgaattagcatgtactagcataattctagcatgaattagcatgtacaagcatgtttctagcatgaattagcatgtttctagcatgaattaggcGGAGCTTATTATCTCCATGCCACCTCATTTCACTCTGATTAGTAGAATTTAtagagcatcatgggtaatgtagtctATCAGCACAAACTACATTATTATGATGTTTTAGGAATAAACGGAATTAAAGTGAACAGATGAGATCAATAACAGCATATATAATCTCAGAGCTCAAACATGGAGAAAAGGAATGAGTTTATACTTCCAGAACATGACTGTTGCACTCGATATCACTCAAATTGAATTTCTGACCAATAAGATTTCATTATGGGCGGAGCTAAACTAAGACAAACCCACAAACTTACATAATTATCATTGGCAGTGTTTAAAGGGAGTGGGCGGGGCTTAAAATAACTGTGTCACCTTACTGTGCACTCAGATTGGTGTAATTTtgtacagcatcatgggtaatgtagtttttcagCACAAACTACAGTAATACCATGATTGTTTTGAAAATTAGTGGAATTAAAGTGAACAGATGAGTTCAATAACAGCATATATAATCTCAGAGCTCAAAAtatggagaaaatgaatgagtttataCTTTTAGAACTTGACTGTTGCACTTGATATTATTTAAATGGAATTCTTGACCAATAAAACTTCATTATGGGCGGGGCTAAACTAAGATAAACCCACAAATTTACATAAATATCATTGGGAGTGCTTAAAAGTAGTGGGTGGAGCCTAATATCTCCATGCCACCTCACTTCGCTCTCTGATTGGTGTAATTTTGtagagcatcatgggtaatgtagtttttcagCACAAACTACATTATTACCTTGATTGTTTTaagaatacattaaattaaagtgaACAGATGAGTTTAACAACAGCATATATATCCTCAGAGCTCAAATGTGGACAAGATTGATGAGTTTATACTTCCAGAAGCTGACTGCTACACTCTGTGTCAGGTAAATTAAATTCTGACCAATGAGATTTCACTATGGGCGGGGCTAATTTAAGACAGACCCACAAGTTTACATAAATATCACTGGCAGTGCTTAACGGGAGTGAGTGGAGCTTAATATTGACTCTGATAGATGGAGTTTAatacagcatcatgggtaatgtagtttttgaGACTTCACTGTGGGCGGAGCTAAACTAGGACAGCTCCTCAGATTTACATAAAAGAAAGCACTTTAATTACGCCACTCCTGGTTAAGATTGCGAGTTGGATCAATTAGATCCATCTGTTAAATACCTGTTTTAAAGGAATGTTTCATGTTAATACAAGCTCCTCTCCAATACTGCAGACACAGATtaactcatatttatttacatatgcaAATCAAACACTATTCTGCAGTTCCTGATTGGCAGGTCCAGATCATTCCAGAATCAAATGTCCTGTAGATTCGTGTGTGAAACAGGAATGATATGTGATTCCCGGGAATGCTGGTGGAGTGTTAAGGCATCCAGGAAGAGGACAGTGAGACAGTTATTCGTGTCTGATTGGTCAATACAGCTGATTGTCACTACAACAGGTTAAAGGTCTCGTAATGCGTTTGGCCTTTGAGTGATGGTGCATTTCTATTATCGCCGGCTCTGTTCTCAAACCTAGTGAGCtccctacatagacagcatctgAAGGCATCACATAGACTCTACACCTTTTAATATGACAGCATGTGTTGTAAAGTGGGCTGAATGAAATGAAAGAAGTTATTATGATTATTGGTAATTTAATGCTACAATCAAAATAGTTCAATTACTTTCTTGTTTTCTAGCTGAATATAGCAGAATTTGTACATTTTGACTgtttagataaatattttttactcGATGCATTGCAAGTTTCAAAATAAttccattatttttgtttattttatcaatttattacTTTTGATCAATTTCTTAACCTAAAATCTGATGACATTTGCTTCAGTTAAAAGGATCTGCCAAATGAACAaatgtatgaaataaataaaagaaagactcAAATAACGAATTAGTAAAATTTAATTAACTATGTATTTATCTTAAATGAAATGCAAGTCATTTGAGAtaaatttgcattaatttaaCTGTCCGTTGGAGGCactgcataatatatatattcattcattcattttcttgtcggcttagtccctttattaatccggggtcgctacagcggaatgaaccgccaactcatccagcaagtttttacgcagcggatgcccttccagccgcaacccatcactggcaaacatccacacacacattcacacacacacactacggacaatttagcctacccaattcacctgtaccgcatgtctttggacgcgaaggcagggagaacatgcaaactccacacagaaacaacaactaagccgaggttcgaaccagcgaccttcttgctgtgaggtggacagcactacctgctgcgccactgcctcaccccatTCAGAGAGAcgccatatatatatactggtcagcaagtgaagtgctatgctggtaaacctcactcctctgacatcttaaaaaagGTCATGCTCCAGAGACAGATGCAAGAGGCCATGGTCTTGAGCCTCCTTGTTATGCGGAGATAtgctccttgttagagcaaccaactcccattcAAACAGacaccagctcagagcgggttgggtgggtAGGACCAGCCGGGTTACACTTACacttacacacttacacacacttacactaacacacacttacacttacACTTACACTTACACTTACActtacacacacccacacacacacacccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatatattatactTTGCATATTAgccttattaaataatttattcctaataatttattttactaattactTGATCAAATTTTTGTTATTATCAATAATACCATTAATTAAGTCGTCATTGCTTTAATGGACTGTATTTTAccaaatgcataaatataaaacGTAGATTTTAATctacaatttaaaatgttattttaagatattgtattttacaagttattaaatagaaataaaatgatcaaactgAAACAGAAATCTCTATTGAGTCTACGATGGCAGATGTCTATGCAGGTGTTATACATGAAGACAGCTCACTAGGATTTGAAACACAGCCAAACTTCAAGACAACATGATACACAGTGTAAAGtgagatttcaaaatgcactAAAAAATTTCAGAGCGGGACTGTATATCATCTATGGGAAGTGTTTAGACTGTGACCAATgctattattgactaatataatcGTCCCTTCCCACACGGGCTGAAAGACATCAGCAGAAATTAAAAGCTGTTTCACAGAAGGATCAATTATTGATGTCAGAAATATTTGTAGAATTTAAGCTTTAAATGTTGGTTTCACCTTGTCTTCAAAGGTTGAGTTTTGATTTGGCCTGAAGATATTTGAGTCCACCCCTTTTGTGATATTGGTACGATCCTTCTGTGGCGGCTCCTGATAAATCTCCCCTTTATAGGTAGTACAGTAGTTTCCCCCAAAGCGATGATGTCACAAAGGTGGATAGCAGAAGGCACTGTGATTGGCTGAGTTGCCACTGGTGGGCGGAGTATGGCTGGTTCCAGTCATGATGGAGTGTCTGATTGGCTGGATGAACTGCATCACGTCTGAGCGAggcatctgattggctgaggagCGTCTAGGCTTCACTGGCTGTGCTGTTACGACTCAAATCCCTGATTCCCTGCAGGATCCGCTTCATATGGCCAACTTTAGTCACACCGAGGTCCT

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0019646 aerobic electron transport chain biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030341 True 7968 lncRNA 0.38 2 43272241 43282798

Neighbor

gene id symbol gene type direction distance location
XLOC_015022 NA coding downstream 20491 43250524 ~ 43251750 (-)
XLOC_015021 gnrhr1 coding downstream 46117 43213527 ~ 43226124 (-)
XLOC_015020 CU207343.1 coding downstream 241353 43029382 ~ 43030888 (-)
XLOC_015019 zcchc17 coding downstream 267885 42996968 ~ 43004356 (-)
XLOC_015018 CU207343.2 coding downstream 288554 42962095 ~ 42983687 (-)
XLOC_015024 NA coding upstream 147007 43429805 ~ 43542568 (-)
XLOC_015025 gpr186 coding upstream 264667 43547465 ~ 43552252 (-)
XLOC_015026 fam83hb coding upstream 329381 43612179 ~ 43639331 (-)
XLOC_015027 si:ch211-193k19.2 coding upstream 371440 43654238 ~ 43659779 (-)
XLOC_015028 NA coding upstream 422117 43704915 ~ 43711293 (-)
XLOC_014711 CR382300.3 misc downstream 23543486 19728690 ~ 19728755 (-)
XLOC_015015 BX324146.1 non-coding downstream 427035 42843109 ~ 42845206 (-)
XLOC_015014 NA non-coding downstream 584049 42685906 ~ 42688192 (-)
XLOC_015031 NA non-coding upstream 615142 43897940 ~ 43901052 (-)
XLOC_015035 NA non-coding upstream 1721003 45003801 ~ 45007057 (-)
XLOC_015036 FP340497.1 non-coding upstream 1874704 45157502 ~ 45244708 (-)

Expression


Co-expression Network