XLOC_015212


Basic Information

Item Value
gene id XLOC_015212
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7657298 ~ 7662101 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033472
CAGTGTTTATGGAAACCCTATGAGGCAGTCCGTTCAATCAACGCCCTCCTACAAACCTGAAGAGCCACTGTTTGTCCATACACATCCCCCCATAGGATCATTTGCTGAAAATGGAGAAGATGGTCCACTTGGTCCTGCTCGTTGGATTTCTGGGTTTATCTGCAGGGCAGCTGATACCTACTGGTGAGTGACTGATCAAACTCTTTCTCTGACACAgtatagaaaaaacaaaaaactacagaATTAGCCAGAGGTCAGCCAGGTAAAGGCTGACCTGAATTGCCGTTTTGTACCTTAGCTATTGTGTGGGAAATAGTTGTTTTTAATTCTTCCTTGTTCCAAAGgttattaactaattaattttagtttttaatttagctGAGAATGTCATTTACATttcttacttatttatttaagaatGTTAATGGTAATTATAGTTCCCTTTCAATTGGTCTCTTCGAATTATGCTGGACATTGACAAATGATGATTCGCTTAAAAGAACTGTATGAAAACAGGCTAATGAAATGTCTTTGTAAAGTGGCAGCTCCAGGATTTTTTGTTGAGGTACCAAGGAGGGGTTACAATAGAGTGTtttaagtgggtgggcgggtcaaacggtggttttgaaaacactattggttgggttgagGAAAGAAGGAGGGTAGGTTAGTCgatcgattggtcagtcagtcagttattagcccctttcacacagacAGACCTttggaaaggtgtgtatgtgtgaacaggctctttttgaGAATACCTTGTATTCCTTgtgcatgtctagaacgtgctgacgtgaaacgcctgctttagccaatcagaacagtcagacgcattcacgtccgcgcggtttatgagaataaaagcctttgaatattttaccagacatatttagctgctagatgttaatCAGATAACGTTTTTATGTTCGTCTTAAtggcaactgtgtaaataattatcgataagatggttatgataagccgttgtttgtttacctttaagctttgcgtgtacccgtgaaagcacacacacattttatgtacatctcgacatgtggaagtgtttctctatatgtttttatcgaagttgttcacaatactgatccgtccacagagtttgtaatgtaatcaaatgtttaCAGATACAAGCCCAGCCGTTTAGAGGTAATTTCTGgttgatgatgtcagaatttactggtattttggaatggatgtgtgaatgctcttttccggaaaaattaaCGTAacataacgtcctcgcctgtgtgaacagcgcttttttgaatttaccggtaaagtcgttccagaaattttccatatatttaccggtatcactgtgtgaaaggggctattcagtcagttgacagcagcctctggtggatttacgcaagaacagcatgtgcgaatggcactcgtgagagaaatttgagatctcaaaaagcgtacactgcggtctctggtggatttgcgaaaaacgTAGCTCTTGGGATGTATTTTTaacgttctccagaaatgtatataggggtacataatcagaatgagcctgggttgggggTTTATAGGTGTGCtcaaaatgctgtttttcagcttcAGCTCTTTCTTTACAGGCATTTCGTTAGTTGGTTTTCATACAATTCAGTAACTGGTCTTCTTAGCAAATCTCAGGGTTCCCCTATTAAACCAAAAATCAAATTCCTTAACTTGTCactgatttctaaaaaaaaaaaaaaaaagacatccaaTGAATGGAAAAACAGGCTACGtttgtgtttataataataatataacattttgcATGACTTTAATACTTATGATGAGAACAACAATGAATAATCTACCACAGATGTTTTTTTACAGTGGCTGTGAAGTGCCCCCTTGATCATATTTGATAGCTTGATAGTAGTTTTATAAGCTTTACATGTAGCTTTTCTGTTGTTACTTTTTAACGCCCAGTCTTTAAAGTGGTCATTCTGAAGCCAAAATTTTTGATCCCTCATTTTTGACTTCAAAAACTTCCAACTGATGAGcttcaaaggaaaaaaaaaaacagctgaaaaaaTAGCCTAACCATAACAATAAACGTGTAACAGATACAAAAAATATAGTATAGAAAAAGTACATGTTTATAGCAACAACTAAAAATCCCTGATAAAAATAacgttatacagttgaagtcaaaattattcaccctcctgtgaatttttttttctttttcaaatatttcccaaattatgtttaacagataaataatttcttttcacagtatttctgataatattttttcttctggggaaagttttatttattttattttggctagaataaaagcagttttaaggtTTTTTGATCTAACCATTATACATGTGCAATGGTTTGCAAaaataccctaacttgcctaattgacctaattaacctacttaaccctttaaatgtcattttaagctaaatattagtgtcttgaaaaatatctagtcacatgttatttactgtcatcatggcaaagataaaataaatcaattattagaaatgagttattaaaactattatgtttagaaatgtgtttaaaaaaatctgctctgcgtTAAACAAAGTaatggaaaaatatacagggggctaatatttctgacttcaactctttaaaaaaatctctgactttcaatgtcttgaatagacattttaaaactccatgatattccagaaattccatGACTTGTGGGAACCCTGAAATCCCCATTCGTCAAACTCCAATGTAACATCACTCTCTTTCTTCCTTCAGGTAACAGTGATGTTACTCCTTCAAACATGGAAGCAACAGCAAACGGGACACAGCCGCCTGGTACATATTTTACTAGTTTGTCATTTGTCGTACATTCACATTTTACTTGTGTATTTCACTCATGAACCTGCTAGTATGGTGATCTATCATTCATGAACCCTATTATTTCCTTGAATCTCTATAAATTTCTTCTGTGGTAAATAATTCAACACGTTTTGCCAATAGTTAGTCACTGGGGTTCAAAACAACActtgtaatataatgtaatgagtAATGTTTTGTGAGATGTAATAACTTTGAGCCAACTGActttgaaagaaaataaaaatatatatgacagGTCACTTATATCACTTTATTAGAGATTAGTAGCACTTTTAATGTAACGCGCTGTCAATTCTTTCATATGCCCTGCAGTAGTAATTGGCATGAGGATGACTGTCAAATCTGTGGTTGATCTGCTCAGAAATTCAGCTGAGATAGAGCTCCTTGTGCGTCAGGTATGAattatttgtttctatttatttctatttaccATAGGACGGTTCTTAAATGTTTCACAACCTTATATAAGCCCAACACTCAcaggaaacattcattcattaattttcctttggcctaCTCCCTTATTTatccacagtgaaatgaaccagcaactattccgccatatgttttaagcagcggatgcccttccagccccaacctgGAACCCCCAACCaatactgggaagcacccatacacactcatacactacggccaatttagtttattcagttcacctataccgcatgtcttcggactggcccagctggtactcgaaccagagactttcttgctgtgaggctacagtgctaaccactgagccatcgtggaAACATTTTGAaccatttcattttcattcagtttCATTCTGTGCAATTTATGAGCGGTTTTTCTCATAGGGACCGAAAAAAGTCACCACAAGTTCAAAATTCACTGGTACCTCTGTACTTGTGGGGATATTATTTGGTGCCCACAAAGTTCTGAATACAATGTCCTGGATAACTGTGAGCCATTGATGACAGACTTCATGCAAAATAATACCTATATGTCATTAAAAGTAGCATGAAACATTAAAATGgctagttatatatttttttatttgctgtataACTGTTCATTGCAGTGTTCTATACATCTATAAACATAAAGCGGAAAGTTTTAATATGCTCTGTCCTTTCAGGTGGAAAGTCTCATTCCTTATGCAGACAAAGGAAAAACGTCCGTTACGGTGAGAAGCATCCGGAGCAGCAGCAGTATTGCTTAAAAACATTCCTAAAATGAGCTATTATCCATCTGAATATGTCAGTGTGATTAGGCCATGTCATTCAGATTcggaaagaaaattaaaaaaaatttctgcctttttatttcttatta
>TCONS_00033237
ATGGAGAAGATGGTCCACTTGGTCCTGCTCGTTGGATTTCTGGGTTTATCTGCAGGGCAGCTGATACCTACTGGTAACAGTGATGTTACTCCTTCAAACATGGAAGCAACAGCAAACGGGACACAGCCGCCTGTAGTAATTGGCATGAGGATGACTGTCAAATCTGTGGTTGATCTGCTCAGAAATTCAGCTGAGATAGAGCTCCTTGTGCGTCAGGTGGAAAGTCTCATTCCTTATGCAGACAAAGGAAAAACGTCCGTTACGGTGAGAAGCATCCGGAGCAGCAGCAGTATTGCTTAAAAACATTCCTAAAATGAGCTATTATCCATCTGAATATGTCAGTGTGATTAGGCCATGTCATTCAGATTcggaaagaaaattaaaaaaaatttctgcctttttatttcttattattttatataaatgttttctttatttgattattaaatcgGTCTTTTTTTCACTAACAATTTTGCCAGAAAAATATCTTTTGTCAACAGTGTAGCTTGAAATGTTACTCAAACATGAGACATTTTCAAGCCAAACTTAGGATGGACAAAGCAGCAAATTCCAatccaggctcattttgaaaacgtacctctatatatatttctggagagcaccaaatacatcacaggagctacattttttctggttttgttttcgtgaatctaccagagaccgctgtgtacattttttgagatctcaaatttatcttgcgagtgccattcgtgcccgctgttctcacgtaaatccaccagaggtcgctgtcaactgactgactgattgactgacccaccctccttcaaTAAACtcaatcaatagttttaaaaagaaatccagaaaaagaaaagctgtcaCCTAATTTTTATcaagttttcagatttgaccacattcacTCTCggttatttacttgattattttatttttagcgtCTGcttttttgtcttacccactttctggaatcATTTTTCGATGGACTTGAACCCCGTCATCACAGTCAACTTCGCAACAGT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0023061 signal release biological_process
GO:0003008 system process biological_process
GO:0048666 neuron development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033472 False 4201 lncRNA 0.36 1 7657298 7661498
TCONS_00033237 True 1016 lncRNA 0.39 4 7657408 7662101

Neighbor

gene id symbol gene type direction distance location
XLOC_015211 NA coding upstream 2680 7647863 ~ 7654618 (+)
XLOC_015210 NA coding upstream 43238 7613166 ~ 7614060 (+)
XLOC_015209 ripk2 coding upstream 69638 7557912 ~ 7587660 (+)
XLOC_015208 NA coding upstream 128241 7526842 ~ 7529057 (+)
XLOC_015207 NA coding upstream 143117 7511477 ~ 7514181 (+)
XLOC_015213 NA coding downstream 53691 7715792 ~ 7727248 (+)
XLOC_015214 CT027646.3 coding downstream 58838 7720939 ~ 7721009 (+)
XLOC_015215 SNORA81 coding downstream 59111 7721212 ~ 7721390 (+)
XLOC_015216 CT027646.4 coding downstream 61293 7723394 ~ 7723583 (+)
XLOC_015217 CT027646.1 coding downstream 61769 7723870 ~ 7723941 (+)
XLOC_015206 CU929374.1 non-coding upstream 262390 7394790 ~ 7394908 (+)

Expression


Co-expression Network