XLOC_015352 (pimr141)


Basic Information

Item Value
gene id XLOC_015352
gene name pimr141
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19505263 ~ 19508136 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030743
ATGGCCTTTTCAAAGTTGATTTCCCGTTTAAAGAAAGCGTTTGGTATCAAGTGTGCACATGAACCACCCCGTGAGCCACTCAAATCCAACGGCAACACGGCAGAACACCACCATCATCCGATAACCGATGACCCGCCCGTCGTTGCAAGAAAACAGGCAGGGAGACAGAATAAGTCTTCCTTCTTTCTAGCCTGTTTCTCCAGAAGAGCAACTGTTGATGATCCGCTCCCTGTGCTGGAGATCCACGACCTTCAGGACGAGCCGATCAGTAGCTCGAAATTCTTTCACACTGCTGTGAACAATCTGGAGCTGGAGGTTCTCCAACCTTCAATTCCTGATGCTTCAGCAGAAGAAGATTTTGACACTGTGAAATCTGAAGTGAACAGCTTTAAACCTCCAGTGAGCCAGCAGTTCTCATCAGATGGCATCTTTGAATTGTTCAGCGGAGACTCTGTGCAGGTTGACATTGACTCTGCACTGGATGAAGACTCGGAGCCTTCACTGAATCAGAAGGTTTCACAAGATGACTCCGCTGATGATTCTGCACTGAGTCTTACAGCAGATGATGAGACCTGTTTGGACAATAatGACATCAGCTCCCGCTACAATCTGGGAAAGCAGCTCGGTGAAGGAGGTTTCGGGTCTGTTTTTGAGGGGATCCGCATACAGGATGATCTGCAGGTGGCTGTTAAATTTGCCCAGATGACACCACGTATGCAAGATCTCTGCTCTtctcATGACCATCCACCTCTAGAGATCACCTTGGCAAGTATGGCCAGCAGTGGCTCCAGGTGTGCCAATATAATTCAGCTCCTAGACTGGCAGGTCTTCAAAGACCATTATGTCATGGTCATGGAGCGGCCTACGCCAAGTATGGATCTGGAGGCATTCCTGCAACTCAACGGAGGCGTCCTCAGCGAGCAAACGGCACAAACTATCATGGGCCAAGCTGTTTATGCTGCCAATGTTTGCTGCTACCGAGGAGTATTCCACAGGGACATTAAGGTGCAAAACCTGCTTGTGAACCCAAACACTCTGGAGGTCAAGCTGATCGACTTCGGCTGCGGAGATTACATGATGGAATCAGGATATTCCACCTTTTCTGGCACTGAAGCGTACATGCCACCAGAGTTTTACCAAAGAGGATGTTACCATGCCAAACCAGCAACTGTCTATTCTCTTGGGGTTCTTCTCTTCACAATGCTGCATGGAGATTTCCCAACGACGTATGACCTGTACTACCTGGAGCACGACTGgtccaaatttaccctctctcaAGAATGCTGTGATCTGATGTGGGCTTGTCTGCAGCAGATTCCAGAGCACAGAATTCTTCTAGGACAGATGCCTTACCATGACTGGTTCATGCTGGAGTAG
>TCONS_00030742
ATGGCCTTTTCAAAGTTGATTTCCCGTTTAAAGAAAGCGTTTGGTATCAAGTGTGCACATGAACCACCCCGTGAGCCACTCAAATCCAACGGCAACACGGCAGAACACCACCATCATCCGATAACCGATGACCCGCCCGTCGTTGCAAGAAAACAGGCAGGGAGACAGAATAAGTCTTCCTTCTTTCTAGCCTGTTTCTCCAGAAGAGCAACTGTTGATGATCCGCTCCCTGTGCTGGAGATCCACGACCTTCAGGACGAGCCGATCAGTAGCTCGAAATTCTTTCACACTGCTGTGAACAATCTGGAGCTGGAGGTTCTCCAACCTTCAATTCCTGATGCTTCAGCAGAAGAAGATTTTGACACTGTGAAATCTGAAGTGAACAGCTTTAAACCTCCAGTGAGCCAGCAGTTCTCATCAGATGGCATCTTTGAATTGTTCAGCGGAGACTCTGTGCAGGTTGACATTGACTCTGCACTGGATGAAGACTCGGAGCCTTCACTGAATCAGAAGGTTTCACAAGATGACTCCGCTGATGATTCTGCACTGAGTCTTACAGCAGATGATGAGACCTGTTTGGACAATAatGACATCAGCTCCCGCTACAATCTGGGAAAGCAGCTCGGTGAAGGAGGTTTCGGGTCTGTTTTTGAGGGGATCCGCATACAGGATGATCTGCAGGTGGCTGTTAAATTTGCCCAGATGACACCACGTATGCAAGATCTCTGCTCTCCACCTCTAGAGATCACCTTGGCAAGTATGGCCAGCAGTGGCTCCAGGTGTGCCAATATAATTCAGCTCCTAGACTGGCAGGTCTTCAAAGACCATTATGTCATGGTCATGGAGCGGCCTACGCCAAGTATGGATCTGGAGGCATTCCTGCAACTCAACGGAGGCGTCCTCAGCGAGCAAACGGCACAAACTATCATGGGCCAAGCTGTTTATGCTGCCAATGTTTGCTGCTACCGAGGAGTATTCCACAGGGACATTAAGGTGCAAAACCTGCTTGTGAACCCAAACACTCTGGAGGTCAAGCTGATCGACTTCGGCTGCGGAGATTACATGATGGAATCAGGATATTCCACCTTTTCTGGCACTGAAGCGTACATGCCACCAGAGTTTTACCAAAGAGGATGTTACCATGCCAAACCAGCAACTGTCTATTCTCTTGGGGTTCTTCTCTTCACAATGCTGCATGGAGATTTCCCAACGACGTATGACCTGTACTACCTGGAGCACGACTGgtccaaatttaccctctctcaAGAATGCTGTGATCTGATGTGGGCTTGTCTGCAGCAGATTCCAGAGCACAGAATTCTTCTAGGACAGATGCCTTACCATGACTGGTTCATGCTGGAGTAG
>TCONS_00030744
TTAAAGAAAGCGTTTGGTATCAAGTGTGCACATGAACCACCCCGTGAGCCACTCAAATCCAACGGCAACACGGCAGAACACCACCATCATCCGATAACCGATGACCCGCCCGTCGTTGCAAGAAAACAGGCAGGGAGACAGAATAAGTCTTCCTTCTTTCTAGCCTGTTTCTCCAGAAGAGCAACTGTTGATGATCCGCTCCCTGTGCTGGAGATCCACGACCTTCAGGACGAGCCGATCAGTAGCTCGAAATTCTTTCACACTGCTGTGAACAATCTGGAGCTGGAGGTTCTCCAACCTTCAATTCCTGATGCTTCAGCAGAAGAAGATTTTGACACTGTGAAATCTGAAGTGAACAGCTTTAAACCTCCAGTGAGCCAGCAGTTCTCATCAGATGGCATCTTTGAATTGTTCAGCGGAGACTCTGTGCAGGTTGACATTGACTCTGCACTGGATGAAGACTCGGAGCCTTCACTGAATCAGAAGGTTTCACAAGATGACTCCGCTGATGATTCTGCACTGAGTCTTACAGCAGATGATGAGACCTGTTTGGACAATAatGACATCAGCTCCCGCTACAATCTGGGAAAGCAGCTCGGTGAAGGAGGTTTCGGGTCTGTTTTTGAGGGGATCCGCATACAGGATGATCTGCAGGTGGCTGTTAAATTTGCCCAGATGACACCACGTATGCAAGATCTCTGCTCTGTAAGTACACTACActttctgtttttctcttctcAGTCACTGTGTTCAACTCATAATGTCTTATATTTAATAGAGGACAACAGGCTGTGGTTAAAAACCCTTGTTTGAaaaccaacattattattttgttttcagtctcATGACCATCCACCTCTAGAGATCACCTTGGCAAGTATGGCCAGCAGTGGCTCCAGGTGTGCCAATATAA

Function

symbol description
pimr141 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-462 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000057253

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030743 False 1377 mRNA 0.49 7 19505263 19508136
TCONS_00030742 False 1365 mRNA 0.49 7 19505263 19508136
TCONS_00030744 True 913 processed_transcript 0.46 4 19505290 19507193

Neighbor

gene id symbol gene type direction distance location
XLOC_015351 cc2d1b coding upstream 230598 19236677 ~ 19274665 (+)
XLOC_015350 elovl1a coding upstream 290151 19163965 ~ 19215112 (+)
XLOC_015349 BX323588.2 coding upstream 360796 19104231 ~ 19144467 (+)
XLOC_015348 glula coding upstream 512913 18988407 ~ 18992350 (+)
XLOC_015347 CR854990.1 coding upstream 1002839 18502308 ~ 18502424 (+)
XLOC_015353 BX664750.4 coding downstream 10949 19519085 ~ 19519182 (+)
XLOC_015354 pimr49 coding downstream 13946 19522082 ~ 19524247 (+)
XLOC_015355 pimr140 coding downstream 50911 19559047 ~ 19563419 (+)
XLOC_015356 BX664750.6 coding downstream 66923 19575059 ~ 19575156 (+)
XLOC_015357 pimr50 coding downstream 69943 19578079 ~ 19580242 (+)
XLOC_015346 CT737196.1 non-coding upstream 1099146 18405569 ~ 18406117 (+)
XLOC_015345 NA non-coding upstream 1169552 18332763 ~ 18335711 (+)
XLOC_015343 BX248089.2 non-coding upstream 1790443 17707492 ~ 17714820 (+)
XLOC_015342 BX248089.1 non-coding upstream 1847187 17657958 ~ 17658076 (+)
XLOC_015358 NA non-coding downstream 81908 19590044 ~ 19595194 (+)
XLOC_015359 NA non-coding downstream 106817 19614953 ~ 19616789 (+)
XLOC_015360 BX088713.3 non-coding downstream 120561 19628697 ~ 19628794 (+)

Expression


Co-expression Network