XLOC_015606 (dre-mir-27a)


Basic Information

Item Value
gene id XLOC_015606
gene name dre-mir-27a
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33902325 ~ 33902455 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031163
TCTGGATATGATGTCTGCTGAAGTTTCGTGAGGTGCAGGACTTAGCTCACTCTGTGAACAGATCTCGGATATCCTATGTTCACAGTGGCTAAGTTCCGCTCCTCTGAGGCCCACACTCGAAATCAGCCAGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000082454

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031163 True 131 miRNA 0.50 1 33902325 33902455

Neighbor

gene id symbol gene type direction distance location
XLOC_015605 dre-mir-23a-3 coding upstream 1813 33900435 ~ 33900512 (+)
XLOC_015603 NA coding upstream 3593 33897470 ~ 33898732 (+)
XLOC_015602 kiss1ra coding upstream 81162 33796207 ~ 33821163 (+)
XLOC_015601 NA coding upstream 130453 33759617 ~ 33771872 (+)
XLOC_015600 BX649508.1 coding upstream 144757 33756378 ~ 33757568 (+)
XLOC_015607 kif2c coding downstream 24151 33926606 ~ 33952021 (+)
XLOC_015608 klhl20 coding downstream 209645 34112100 ~ 34126879 (+)
XLOC_015609 dars2 coding downstream 235921 34138376 ~ 34173489 (+)
XLOC_015610 NA coding downstream 278690 34181145 ~ 34356669 (+)
XLOC_015611 NA coding downstream 536990 34439445 ~ 34439731 (+)
XLOC_015593 NA non-coding upstream 221189 33680073 ~ 33681136 (+)
XLOC_015612 NA non-coding downstream 575544 34477999 ~ 34478878 (+)
XLOC_015614 NA non-coding downstream 920113 34822568 ~ 34822884 (+)
XLOC_015616 NA non-coding downstream 1243841 35146296 ~ 35215487 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G138201 NA non-coding NC_053124.1 CM020921.1 32504747 ~ 32544401 (-)
eurasian perch (Perca fluviatilis) G27710 NA non-coding NC_053114.1 CM020911.1 16383992 ~ 16384249 (+)
striped catfish (Pangasianodon hypophthalmus) LOC113540553 NA non-coding NC_047598.1 CM018544.1 24839221 ~ 24849487 (+)
tiger barb (Puntius tetrazona) G24799 NA non-coding NC_056702.1 CM032071.1 620177 ~ 620588 (-)
mexican tetra (Astyanax mexicanus) G137596 NA non-coding NC_035912.1 CM008315.1 55706 ~ 68862 (+)