XLOC_016054 (ftr93)


Basic Information

Item Value
gene id XLOC_016054
gene name ftr93
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 696244 ~ 707152 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031727
GGAAACTGAAACTTAACTCTCTGTGACTTACATTGAGAAGAAGCTCCTTCGGTACAATGGCAGAAGCCGGCGTTTCAGTGGATCAGTTCAGCTGTCCGGTGTGTCTGGATGTGATGAAGGATCCAGTGACCATCCCGTGTGGACACAGCTACTGCATGAGCTGCATTACTGACTGCTGGAACCAGGAGGAGCTGAAGAACACTGAGAAGATCTACAGCTGCCCTCAGTGCAGACACACCTTCAGCCCCAGACCTGCTTTATTCAAGAACAtagTGTTTGCTGAGATGATGGAGAAGCTGCAGAAGACGAAAGTTTGTGCTGCTGCTGGAGCTGGAGACGTGCAGTGTGACGTGTGCAGAAAACACAGAGCTGTTCAGTCCTGTCTGGTGTGTCTGAACTCTTACTGCCAGACTCACTTTGAGCGCCATGAAGAGTTCCACCCCGGTAAACGGCACACAGTGATCGAAGCCACCGGGAAACTGCAGGACATGATCTGCAAAAAACACCACAAGCTTCTGGAGGTTTTCTGTCGCACTGATCAGATCTGCGTTTGCATGCTGTGCATGGTGGATGAACACAGAAATCACGACACTGTGTCCACTGCATTACAGAGGACGGAGAAAGAGACTGAGTTGAAAGAGCTGCAGGTGAAATGCCAACAGAGGATCCTGCAGAAACAGAAAGAGCAGCAGCAGCTGAGAGAAGCCGTGACATCTCATAAACGCTCCGCCAATGCAGCGGTGCAGGACTGTCAGAGGATCTGCTCAGAGCTCGTCAGCTCCATCGAGAGAAGCTGTGCAGAGCTGAAAAAGCAGATCAGAGATCAGGAAAAGACGGCAGTGCGTAAAGCTGAAGGAGTCTTGAAGAAACTGCAGGAGGAGATCGATGATCTGAGGAGGAGAGACGCAGAGATGAAGCAGCTCACAGAAACACAGGATAACATTCATTTCCTGCAGagTTTTCAGGCTTTGTCTGTTCTTCTTGGAGAATCTACAGACCACACAGCGCTGGAGATGACTGTCAGCGCTCATCCGCCTTTTCATTACGTGAAAGAATCTCTTTCTGCCATGAGGGAGAAGCTCGATGACTTCTGCAGAAATGAATTGAAAACTATTTCTGACAGAGTGAAATGTGTGGAGATCATTCCCTCACCCTCTCCTGAACCACAGAGCAGAGAGCAGTTCCTGCATTaCTCCTACCAGCTGAAACTGGATCTGAACTCAATATGTCGAGCGCTCGGTCTGTCTGAAGGAAACACTGAGATCTTTCAGGGTGACACGTGGTATGAATATCCTGATTATCCAGACAGATTTGACTACTGGGACCAGGTGCTGTgtacagagagtgtgtgtggacgctccTACTGGGAGATTGAGCTGAGTGAAACTGGTTCTGTAGATATCGCTGTGTCATATAAGAACATACGCAGGAAGGGTGATTATAATAGGAGGGAGTGTTTATTTGGAAATAATGATCATTCCTGGAGTCTGGGTTTCAGCAGATACCCTGACTTTTCCAGATGCACATTCACTCACAACAGCACAGTGACTGCACTCCCTTTCATCCCAAAATCCCGTAAAATAGGAGTGTATGTGGATCACAGAGCGGGAACTCTGTCCTTCTACAGCGTCTCTGATAAAATGAGCCTCATCCACCGAGTCCGGACCACATTCACTCAGCCGCTCTATCCTGGATTTAGAGTTATCTATGGGACGTGTATGAAACTGTGTGATTTATCAAAATAGAGGTATCTTAAAGGGGAACTGTTATGCAGAAATCTTGATGAATGATGAATTCTTGATTcttgatgaatgaaacactttgattgatgttctccctttgtacgtgtcatcagaggggcgGAAGCCAAGCCTTTATctgtccctcattagcataatcagccctgagtgagaagcagccgtctgacGGGAGTTTTGAATCAGCCACTATGGTGGCGCACATGCATTTATGGCTCTAacaagagcacaatctcatttgaattgacGGTGGGAAAAGCCAGTATAAAATAATGTAtgatgttttaaatatgtttaaaactgAGCGATTTATCAAAATAGGGATATATTAGAATATAGTTGAAGTCTTAAAGGGgtaattcatccaaaaatgaaaattctgtcatcatttactctccctttagtTGTtcccaaacacaaacacagaagaTGCTTTAAAGAAAGACCGTTTGGGTGAGAATGTCAGTTTCCAGAAAAGAGAAGAGAAATTAGACTTTTCATAATTGATTTGGAGAAAGGTAGAGTTTGATTaggaattattcgccctcctgttaaatcctaattcttttatatttgtatttttaccaTTTTCTATGTAATTgaaagaacacatttctaaacctaatagtcaatagaataaataaataaataaataaataaataaataatattgctgtagggggctaataataatgacattaaaaatatataaaacaatttaaaaactgcttttattctagccgaaataaaacaaacaagactttctccagaggaacaaATATTggaggaaatattgtgaaattgtTTTAATcggtttataaataaaaaattattattattatttttttaaataaaaggagggtgaataatttagactttagacaactgtacacttaaaaaaactcctggttgccttaaatttttaagctgaatcacaTTAACCTATTGAgtctattgaacttatattatgttaaacagactcaaaacagcttgcataacgtATAAAactaagttagaacatgattaacttagtttaataagttacaatgaactaaaaacatatgctgtcatgactaattgatcatcaTTTTCACAGTGTATGTGTTCACTTTGCTCCAGCATAACACTCTTCTGTTTGATTTGTGTGGAGGTATTTGGAGTTTTGACGAATTGAGTTTATACAAATTACACACTTTAAATAATCATTTCGTCAATTTGCACATGTTATTGGCATTTATATTTTGTTAACTGATGATTTGTTATAGAtatgcatgtttaaaataaactccattgttttgaaactgat

Function

symbol description
ftr93 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131126-26 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

Ensembl:

ensembl_id ENSDARG00000039852

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031727 True 3063 mRNA 0.41 8 696244 707152

Neighbor

gene id symbol gene type direction distance location
XLOC_016053 foxc1a coding downstream 7197 686873 ~ 689047 (-)
XLOC_016051 NA coding downstream 81388 552481 ~ 614856 (-)
XLOC_016052 CABZ01117963.1 coding downstream 112677 583451 ~ 583567 (-)
XLOC_016050 NA coding downstream 163800 492923 ~ 532444 (-)
XLOC_016049 NA coding downstream 237333 405330 ~ 458911 (-)
XLOC_016055 foxf2a coding upstream 5928 713080 ~ 716426 (-)
XLOC_016056 foxq1a coding upstream 13629 720781 ~ 722170 (-)
XLOC_016057 NA coding upstream 21508 728660 ~ 730230 (-)
XLOC_016058 CU861459.1 coding upstream 24339 731491 ~ 732864 (-)
XLOC_016059 irf4a coding upstream 147292 854444 ~ 879800 (-)
XLOC_016046 CU693494.1 non-coding downstream 343465 352097 ~ 352779 (-)
XLOC_016061 NA non-coding upstream 223916 931068 ~ 1195912 (-)
XLOC_016063 NA non-coding upstream 411600 1118752 ~ 1121302 (-)
XLOC_016067 NA non-coding upstream 608014 1315166 ~ 1331542 (-)
XLOC_016069 NA non-coding upstream 698359 1405511 ~ 1406153 (-)

Expression


Co-expression Network