XLOC_016065 (abcf3)


Basic Information

Item Value
gene id XLOC_016065
gene name abcf3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 1218758 ~ 1227221 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031738
acacacacacacacacacacacacatatatatatacacacacacacatatatatatatatatatatatatatatatatatatatatatatgcatatatatatattacatttacaaaaaaaaaattgctgtgtatacactcaccggccactttattaggtacacctgtccaactgtttgttaatgcAAAATTTCTCATCAGCCTATCACATAGCTGCAACTCAATGCCGTTAggcaagtagacatggtcaagacaatctgctgcagttcaaaacgaGTATCAGCATGGGAAAGAAAGGTGGTTTCAACCTTCAGGTAAATGATTttgcacctttgggatgtggtggaacgggagattggcatcatggatgtgcagccgacaaatctgcagcaactgcgtgatgctatcatgataatatggagcaaaatctctgaggaatatttacagtggCTTGGTAACTCTacgtcatgaaggattaaggcagttctgaaggcaaaaggggtccaacttggtactagtaaggtgtacctaataaagtggccggtgagtgtatatagatACAcataaattgtcaaaaaaaaaaaaccttttcattTGGATCTGATTGATCTTTGGCCAGCactaagtttttttattattattattatcaatattattattaattacaaacTTTTGAAATGGTTTACATTTTGTTAGAAGCATAACATCATTACGAATGACTATTCTGATTATTGTAACTCAgcataatatcaaaataaaagtttattaattaattcattaacaaAAAAGATTCCCGCTGGTGCTTGATTGATGTGGGTTTTTCCCATTGTTGTCACAATATTAACTACATATTAACTGAAATGTAAAATGAAATGGcttgtgttaatgttgttttcaggtGTTCATCGACCGCTTCAGATATAACGCCAACAGAGCCGCTCAAGTGCAGAGCAAACTCAAGCTGCTGGAGAAACTGCCTGAACTCAAGCCTATGGTCAAGGAGTCTGAAGTCGCCTTACGTTTTCCGGATAACTTTGAGAAGTTGTCTCCGCCAATCCTGCAGCTGGATGAGGTGGAGTTCGGATATTCGCCTGAGCAACGGCTCTTCAGCGGACTCTGCATCTCCGCTGATCTGGAGTCACGCATTTGCATTGTTGGTGAGAATGGAGCTGGTAAATCCACTCTACTGAAGCTGCTGATGGGAGAACTGACGCCCCTCGGTGGAGCCAGACATGCACACAgAAAGCTGAAGATCGGTTATTTCAGCCAGCATCACGTGGATCAGCTGGACCTGAACGTCTGCTCCATAGAGCTGCTGCTCAAGAGATTTCCAGgtgagACGGAGGAGGAGTATCGCCATCAGCTGGGCAGATACGGCATCACTGGAGAATTAGCCACGCGGCCGGTGGCCAGTTTATCAGGAGGACAGAAGAGCCGCGTGGCTTTCGCTCAGATGACCATGCCCTGCCCCAACTTCTACATTCTGGATGAACCGACCAATCATCTGGACATGGAGACCATCGAGGCCTTGGCAAAAGCACTCAACAAATTCAAGggtggTGTGGTTCTGGTGTCCCACGACGAGCGCCTCATCCGGATGGTCTGTAAAGAGCTGTGGGTGTGTGAAGCTGGTCGGGTCCACCGTATAGACGGAGGTTTCGATGAGTATAGAGATATCTTGCAGGAACAGTTTCGCAAAGAGGGATACTTGTGA

Function

symbol description
abcf3 Predicted to enable ATP binding activity. Orthologous to human ABCF3 (ATP binding cassette subfamily F member 3).

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-050517-32 Predicted to enable ATP binding activity. Orthologous to human ABCF3 (ATP binding cassette subfamily F member 3).

Ensembl:

ensembl_id ENSDARG00000089705

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031738 True 1713 mRNA 0.43 8 1218758 1227221

Neighbor

gene id symbol gene type direction distance location
XLOC_016061 NA coding downstream 22846 931068 ~ 1195912 (-)
XLOC_016064 CABZ01084564.1 coding downstream 30051 1174778 ~ 1188707 (-)
XLOC_016063 NA coding downstream 97456 1118752 ~ 1121302 (-)
XLOC_016062 si:ch211-241e1.3 coding downstream 233341 944341 ~ 985417 (-)
XLOC_016060 dusp22b coding downstream 319859 881954 ~ 898899 (-)
XLOC_016066 ZNF521 coding upstream 37750 1264971 ~ 1279387 (-)
XLOC_016067 NA coding upstream 87945 1315166 ~ 1331542 (-)
XLOC_016068 ss18 coding upstream 121060 1348281 ~ 1364678 (-)
XLOC_016069 NA coding upstream 178290 1405511 ~ 1406153 (-)
XLOC_016070 rpe65a coding upstream 201475 1428696 ~ 1443692 (-)
XLOC_016057 NA non-coding downstream 488528 728660 ~ 730230 (-)
XLOC_016051 NA non-coding downstream 603902 552481 ~ 614856 (-)
XLOC_016052 CABZ01117963.1 non-coding downstream 635191 583451 ~ 583567 (-)
XLOC_016076 NA non-coding upstream 418338 1645559 ~ 1647983 (-)
XLOC_016079 CU929426.1 non-coding upstream 944150 2171371 ~ 2172639 (-)
XLOC_016081 dre-mir-460 non-coding upstream 1074137 2301358 ~ 2301434 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000098_01900523_01905648 ABCF3.S, ABCF3 coding CI01000098 null 1900523 ~ 1905955 (+)