XLOC_016074 (dab1b)


Basic Information

Item Value
gene id XLOC_016074
gene name dab1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 1522721 ~ 1569250 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031747
ATGTCAACAGAGGCTGAACCTCAAGCAGAACTTAAAGTCACCGTCAAGAAGGAGTCCAGGAGAAGAGGTCAGGATCGCAGTGAACAGGCGCTGATTCAGCGCTACAGAGGTGACGGGATCCGTTATAAGGCTAAACTAATTGGGATTGATGATGTGACGGCGACGCGAGGAGACAAACTGTGCCAGGACTCCATGATGAAGCTGAAGGGAATCGCTGCCTCTGCGCGCTCAAAAGGGAAACACAAGCAGAGGATTTTCCTGACCGTGTCTTTTGGTGGAATCAAGATTTATGATGAGCGATCAGGGGTCTTACAGCATCATCACTCTGTTCATGAAATCTCCTACATTGCCAAAGACTCACGAGACCATCGCGCCTTCGGCTATGTGTGCGGGAAAAAAGGCAACCACAAATTTGTGGCAATCAAAACCAGCCATGCAGCAGCGCCAGTTATACTGGATCTGCGAGACCTTTTCACCCTCATTCATGATATAAAACAAAGGGAAGAAGCAGAAAAAAAGAGCCAGAAGGAAAAACACTGTGAACAAGTCATCTATCAGACTATTCTGGAAGATGAGGTTGATGATCCGGTGTATCAGttttgtGTGTTTCCCAGACATCGACGTAACTCGCGGGTGTACATAGCACGTGTTTGCATCATGATGGAATTGTTATTCATAAGGTGA
>TCONS_00031748
ctctCCAGCGTCGAGAAGCGGAAACTGAGCAACTTCACATGCTGCCTCTTGATATTTGACTTTCGCATGTAGCCTATATGTACATGCAGGAATGGATTTAACTCATAATCCGAGCACTAGAGCTGCTGGACATTGATAATGGTTGGAAATAAATGGATGTATATCGGAAGTGACCGCGACGAGCGTTTCAGAAGAGAATAATGTGAATTTCAGAGGATCAGCTGTGAAAAAGCAAGCAGAAGAAACAGGGGTTCTCACCATCTGGAGTTGTGTGTGTGATACTGGATTTAATGTCAGATGACAGGGACAGTATGGCAGCACATTGAAATATCCTCAAGACGACTAGAAGACACTTTAGGAGAAGCAGCTCCATGATACGGAGAGGAGCAAAAACACGGGAGGATGTCAACAGAGGCTGAACCTCAAGCAGAACTTAAAGTCACCGTCAAGAAGGAGTCCAGGAGAAGAGGTCAGGATCGCAGTGAACAGGCGCTGATTCAGCGCTACAGAGGTGACGGGATCCGTTATAAGGCTAAACTAATTGGGATTGATGATGTGACGGCGACGCGAGGAGACAAACTGTGCCAGGACTCCATGATGAAGCTGAAGGGAATCGCTGCCTCTGCGCGCTCAAAAGGGAAACACAAGCAGAGGATTTTCCTGACCGTGTCTTTTGGTGGAATCAAGATTTATGATGAGCGATCAGGGGTCTTACAGCATCATCACTCTGTTCATGAAATCTCCTACATTGCCAAAGACTCACGAGACCATCGCGCCTTCGGCTATGTGTGCGGGAAAAAAGGCAACCACAAATTTGTGGCAATCAAAACCAGCCATGCAGCAGCGCCAGTTATACTGGATCTGCGAGACCTTTTCACCCTCATTCATGATATAAAACAAAGGGAAGAAGCAGAAAAAAAGAGCCAGAAGGAAAAACACTGTGAACAAGTCATCTATCAGACTATTCTGGAAGATGAGGTTGATGATCCGGTGTATCAGTACATTGTGTTTGAAGCCGGACACGAGCCCCTGCATGGCCACCAATCAGAGGAGAGCGTTTACCAGGTCCCCACAAGTCAGCAGAAAGACGGGATCTATGACGTTCCAAAACACCATCTAATGGCTAATATTAGCCAGGTGGATCTTTTTGGAGACATGGCCACCCCGCCAGACATCCTTTCTATGCCCGCATCACCGGCCACCACACTGGATCCCGGAAGGAGACGACGATTTGTCCGACCTGAACTCTTCACCCATTTTAGTCCACCCGCTGTCCCCACAGGTTATATGACCATGGGTGCCCTCCAGGCGGCTCACTGGACGCCCCAGGCCACTCCGATGGCGTTCGGGGTTCAGACACCGCTCCACATGGCCCAGATGCTCCCCGGAGGACAGCCTGTGATTTGGGGCCAGGCCAACCTCTTCCACTCCCCAGCCACGGGTCAGCAGCAGTGGGCGTTCGTCCCAGCGCAGGCTGTTGGTTTGGGGACGCACCCCATTTCAGCCGCGGTGCTCCAGGGTCTGATCCCCCTCGCCAGCATGCGCCCTCAGTCCTGTGAACCTCCGGAGACGTCCTCAAACTTTATGAGCCCTCAGCATTTAGTAGACTCAAGGGGATCTGAGCATGCCATAAACACAGACCCTCATGAGGAAGTAATAACTGCGGAGATTTGCATAAACAAACAGGACACTATTGAGCCCTCGGTGGACTCCTGCGAGGAGCTGGATCTTTCACAGATGACACTGCAGACTACAGAGCCGTCGACATCAGCGTCCGCTACTGATTCTTGTGCGACTCCTGATCCGGAGAAGCAAACCACCGCAGATGCCACTTCAGTAGAGGAATTACAGGACAGCTCAGTCAGTGTGCCAGAAGTTTTGGAGAAAGCAGCAGATGCTCAGATAAATCCTCCAGACTCTTCCCAGCAGGATGCCTAAAGA
>TCONS_00031750
GAAGCAGCTCCATGATACGGAGAGGAGCAAAAACACGGGAGGATGTCAACAGAGGCTGAACCTCAAGCAGAACTTAAAGTCACCGTCAAGAAGGAGTCCAGGAGAAGAGGTCGGTTCAGCGTTTTTACAGTGACCGGTCAGGATCGCAGTGAACAGGCGCTGATTCAGCGCTACAGAGGTGACGGGATCCGTTATAAGGCTAAACTAATTGGGATTGATGATGTGACGGCGACGCGAGGAGACAAACTGTGCCAGGACTCCATGATGAAGCTGAAGGGAATCGCTGCCTCTGCGCGCTCAAAAGGGAAACACAAGCAGAGGATTTTCCTGACCGTGTCTTTTGGTGGAATCAAGATTTATGATGAGCGATCAGGGGTCTTACAGCATCATCACTCTGTTCATGAAATCTCCTACATTGCCAAAGACTCACGAGACCATCGCGCCTTCGGCTATGTGTGCGGGAAAAAAGGCAACCACAAATTTGTGGCAATCAAAACCAGCCATGCAGCAGCGCCAGTTATACTGGATCTGCGAGACCTTTTCACCCTCATTCATGATATAAAACAAAGGGAAGAAGCAGAAAAAAAGAGCCAGAAGGAAAAACACTGTGAACAAGTCATCTATCAGACTATTCTGGAAGATGAGGTTGATGATCCGGTGTATCAGAATATTAGCCAGGTGGATCTTTTTGGAGACATGGCCACCCCGCCAGACATCCTTTCTATGCCCGCATCACCGGCCACCACACTGGATCCCGGAAGGAGACGACGATTTGTCCGACCTGAACTCTTCACCCATTTTAGTCCACCCGCTGTCCCCACAGGTTATATGACCATGGGTGCCCTCCAGGCGGCTCACTGGACGCCCCAGGCCACTCCGATGGCGTTCGGGGTTCAGACACCGCTCCACATGGCCCAGATGCTCCCCGGAGGACAGCCTGTGATTTGGGGCCAGGCCAACCTCTTCCACTCCCCAGCCACGGGTCAGCAGCAGTGGGCGTTCGTCCCAGCGCAGGCTGTTGGTTTGGGGACGCACCCCATTTCAGCCGCGGTGCTCCAGGGTCTGATCCCCCTCGCCAGCATGCGCCCTCAGTCCTGTGAACCTCCGGAGACGTCCTCAAACTTTATGAGCCCTCAGCATTTAGTAGACTCAAGGGGATCTGAGCATGCCATAAACACAGACCCTCATGAGGAAGTAATAACTGCGGAGATTTGCATAAACAAACAGGACACTATTGAGCCCTCGGTGGACTCCTGCGAGGAGCTGGATCTTTCACAGATGACACTGCAGACTACAGAGCCGTCGACATCAGCGTCCGCTACTGATTCTTGTGAGTTCACGAGATGGAGGGTTATTATCTTGTGAAAGATGTTTTTACtaacaagattattttaatactcgaaaactaaaactaatctaaactagtcaacccgggctcattgtggaaacgta
>TCONS_00031749
GAAGCAGCTCCATGATACGGAGAGGAGCAAAAACACGGGAGGATGTCAACAGAGGCTGAACCTCAAGCAGAACTTAAAGTCACCGTCAAGAAGGAGTCCAGGAGAAGAGGTCGGTTCAGCGTTTTTACAGTGACCGGTCAGGATCGCAGTGAACAGGCGCTGATTCAGCGCTACAGAGGTGACGGGATCCGTTATAAGGCTAAACTAATTGGGATTGATGATGTGACGGCGACGCGAGGAGACAAACTGTGCCAGGACTCCATGATGAAGCTGAAGGGAATCGCTGCCTCTGCGCGCTCAAAAGGGAAACACAAGCAGAGGATTTTCCTGACCGTGTCTTTTGGTGGAATCAAGATTTATGATGAGCGATCAGGGGTCTTACAGCATCATCACTCTGTTCATGAAATCTCCTACATTGCCAAAGACTCACGAGACCATCGCGCCTTCGGCTATGTGTGCGGGAAAAAAGGCAACCACAAATTTGTGGCAATCAAAACCAGCCATGCAGCAGCGCCAGTTATACTGGATCTGCGAGACCTTTTCACCCTCATTCATGATATAAAACAAAGGGAAGAAGCAGAAAAAAAGAGCCAGAAGGAAAAACACTGTGAACAAGTCATCTATCAGACTATTCTGGAAGATGAGGTTGATGATCCGGTGTATCAGTACATTGTGTTTGAAGCCGGACACGAGCCCCTGCATGGCCACCAATCAGAGGAGAGCGTTTACCAGGTCCCCACAAGTCAGCAGAAAGACGGGATCTATGACGTTCCAAAACACCATCTAATGGCTAATATTAGCCAGGTGGATCTTTTTGGAGACATGGCCACCCCGCCAGACATCCTTTCTATGCCCGCATCACCGGCCACCACACTGGATCCCGGAAGGAGACGACGATTTGTCCGACCTGAACTCTTCACCCATTTTAGTCCACCCGCTGTCCCCACAGGTTATATGACCATGGGTGCCCTCCAGGCGGCTCACTGGACGCCCCAGGCCACTCCGATGGCGTTCGGGGTTCAGACACCGCTCCACATGGCCCAGATGCTCCCCGGAGGACAGCCTGTGATTTGGGGCCAGGCCAACCTCTTCCACTCCCCAGCCACGGGTCAGCAGCAGTGGGCGTTCGTCCCAGCGCAGGCTGTTGGTTTGGGGACGCACCCCATTTCAGCCGCGGTGCTCCAGGGTCTGATCCCCCTCGCCAGCATGCGCCCTCAGTCCTGTGAACCTCCGGAGACGTCCTCAAACTTTATGAGCCCTCAGCATTTAGTAGACTCAAGGGGATCTGAGCATGCCATAAACACAGACCCTCATGAGGAAGTAATAACTGCGGAGATTTGCATAAACAAACAGGACACTATTGAGCCCTCGGTGGACTCCTGCGAGGAGCTGGATCTTTCACAGATGACACTGCAGACTACAGAGCCGTCGACATCAGCGTCCGCTACTGATTCTTGTGAGTTCACGAGATGGAGGGTTATTATCTTGTGAAAGATGTTTTTACtaacaagattattttaatactcgaaaactaaaactaatctaaactagtcaacccgggctcattgtggaaacgta

Function

symbol description
dab1b Predicted to be involved in lateral motor column neuron migration and ventral spinal cord development. Predicted to be active in cytoplasm. Is expressed in several structures, including blood; digestive system; immature eye; nervous system; and otic vesicle. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 37. Orthologous to human DAB1 (DAB adaptor protein 1).

GO:

id name namespace
GO:0097477 lateral motor column neuron migration biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-7958 Predicted to be involved in lateral motor column neuron migration and ventral spinal cord development. Predicted to be active in cytoplasm. Is expressed in several structures, including blood; digestive system; immature eye; nervous system; and otic vesicle. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 37. Orthologous to human DAB1 (DAB adaptor protein 1).

Ensembl:

ensembl_id ENSDARG00000003290

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031747 False 684 mRNA 0.47 8 1522721 1548330
TCONS_00031748 False 1941 mRNA 0.51 14 1523173 1569250
TCONS_00031750 False 1452 mRNA 0.51 9 1527384 1548372
TCONS_00031749 True 1578 mRNA 0.51 11 1527384 1548372

Neighbor

gene id symbol gene type direction distance location
XLOC_016073 c8b coding downstream 4361 1478225 ~ 1518360 (-)
XLOC_016072 si:ch211-188c16.1 coding downstream 36698 1470070 ~ 1486023 (-)
XLOC_016071 gpaa1 coding downstream 54463 1453034 ~ 1468258 (-)
XLOC_016070 rpe65a coding downstream 79029 1428696 ~ 1443692 (-)
XLOC_016069 NA coding downstream 116568 1405511 ~ 1406153 (-)
XLOC_016075 prkacbb coding upstream 25094 1594344 ~ 1622641 (-)
XLOC_016076 NA coding upstream 76309 1645559 ~ 1647983 (-)
XLOC_016077 tubb2 coding upstream 441027 2010277 ~ 2020044 (-)
XLOC_016078 slc22a23 coding upstream 455360 2024610 ~ 2096055 (-)
XLOC_016079 CU929426.1 coding upstream 602121 2171371 ~ 2172639 (-)
XLOC_016067 NA non-coding downstream 191179 1315166 ~ 1331542 (-)
XLOC_016061 NA non-coding downstream 326809 931068 ~ 1195912 (-)
XLOC_016063 NA non-coding downstream 401419 1118752 ~ 1121302 (-)
XLOC_016057 NA non-coding downstream 792491 728660 ~ 730230 (-)
XLOC_016081 dre-mir-460 non-coding upstream 732108 2301358 ~ 2301434 (-)
XLOC_016082 NA non-coding upstream 916185 2485435 ~ 2494300 (-)
XLOC_016090 FO818692.1 non-coding upstream 1556708 3125958 ~ 3126074 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000098_02499574_02514594 DAB1, DAB1B coding CI01000098 null 2499574 ~ 2514594 (-)