XLOC_016084 (serbp1b)


Basic Information

Item Value
gene id XLOC_016084
gene name serbp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 2630188 ~ 2642476 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031759
CAAATCTAGTGAGgtatataatgatataattaaatttattaaagaaACCCAGTTAGAGGAAAGAATATAGAGATAATATCAGAAGAATTGTTAGTCCACCCCATCCCCCAtttgtattaaattttattactattattaaaaaggtttttttttttttttttttttccctctctccccCTCCCCTCACAATTTCCTCCCCCTTTCTCTCCCTTCATGTAATTTATACACTTCAGAAAGTATTCAACTAGTTCCATACTCCATTCCAgtcggtggcggtaatgcacctatAAGTCTGGTTGCCAACCGCCAGTAAaacccaaagaagaagaagaagaagaaaactaCACCCCCCATATGGCGCGAAAGCTGCGATGTCCCGGATGTTGAGAGCGCCGGAAGAGAAGCAGGTGTCTTCCTTGGCCATCTTGTGTTTGTCCACCGTGAGCCGTTCGCTCAAAGCCTCGAAGAATCGGAGGAGAATCCCGCTGTTGGGGCGCCATCATGCCCGGGCATCTGCAAGAAGGCTTCGGCTGCGTCGTTACCAATCGCTTCGACCAGCTATTGGACGACGAATCCGACCCCTTCGAGATATTAAAGGCGGCCGAAAACAAGAAGAAAGATGCGGCCGCGTCAGGAGGCTCGAAGACGGCAGCTCAAGCTGCAAAACAGCCGAAAAAGGAGTCCCAGAAAGACAGGAAAAACACAGCGCAGGACAAGAAAGAAGACATCCAGCCCCCCGTGCCACTTAAGAAGGAGGGGATGAGGAGGGTTGGCCGGAAGCCGGAGCAACAGCAGGGTCCAGCCAGCTCCCAACACCCGGGAGGTCCAGGAGAGGGTCGACCCGGAGACAGGAGGCCTGACAGACGACCTCCTCGTGAGCGACGCTTTGATAAACCCGCTGACGAGAAGCCAGAGGGGGGAGATTTCTCTGCGGACAAGCCAATTGGGGATAAGCCATCTAGAGGACGTGGAGGAGGACGAGGAATGGGCCGCGGGGGCCGAGGACGAGGGATGGGACGCGGAGACGGTTTTGATTCCCGGGGGAAACGTGACTTTGACAGACACAGCGGCAATGATAAAGCTCGACAGAAAGGAGAGGAGAAGCGCAGTGGGAGCGGCTCGCACAACTGGGGCGGTGTGAAGGAAGAAACCAGTGAGCTTGATCAGTCTGCAGCACCTGAGCCTGTGCCTGAAGGTGAAGAACACGCCCCTGCTGACTCCGAAAACAAGGAAAATGAAGTAGAGGAGGTGAAGGACGAAGGCCCGAAGGAGATGACCCTGGACGAGTGGAAGGCCATGCAAGACAAAGAACGAGCCAAAGTCGAGTTTAACATCCGCAAACCCAACGAGGGAAACGACGGTCAGTGGAAGAAGGGCTACGTACTGCACAAGTCAAAGAGCGAGGAGGTTGGCACGGTAGGTGAACGGCATGCTGGATCTGTGATTGAAGCTGGAGATGTTGACCCCGACTCATTCCACAAGgCTGAAGAAGGTGGAGATCACCACTTCCGTAAGCCAGCCAATGACATCACCTCGCAGCTGGAGATAAACTTTGGAGATTTGGGTCGGCCTGGACGCGGGCGCGGAGGCTCTCGTGGGGGACGTGGCGGTCGCGGTGGTGGCGGTGGCAGCGGCGGGGGACGACCAAGCCGAGGCGGAGGCAGATCTGAGAAGGGTGGAGGTGTTTCCGTTCCCAACGTTGACGATCCTGAGGCTTTTCCAGCTCTGGCTTAA

Function

symbol description
serbp1b Predicted to enable mRNA 3'-UTR binding activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human SERBP1 (SERPINE1 mRNA binding protein 1).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-196 Predicted to enable mRNA 3'-UTR binding activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human SERBP1 (SERPINE1 mRNA binding protein 1).

Ensembl:

ensembl_id ENSDARG00000087421

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031759 True 1734 mRNA 0.53 9 2630188 2642476

Neighbor

gene id symbol gene type direction distance location
XLOC_016083 CABZ01088149.1 coding downstream 6205 2621400 ~ 2623983 (-)
XLOC_016082 NA coding downstream 135888 2485435 ~ 2494300 (-)
XLOC_016080 pth1r coding downstream 179007 2290148 ~ 2451181 (-)
XLOC_016081 dre-mir-460 coding downstream 328754 2301358 ~ 2301434 (-)
XLOC_016079 CU929426.1 coding downstream 457549 2171371 ~ 2172639 (-)
XLOC_016085 usp14 coding upstream 148097 2790573 ~ 2813259 (-)
XLOC_016086 si:ch1073-82l19.1 coding upstream 284987 2927463 ~ 2957970 (-)
XLOC_016087 guk1a coding upstream 384326 3026802 ~ 3045863 (-)
XLOC_016088 arf1 coding upstream 420261 3062737 ~ 3077027 (-)
XLOC_016089 wnt3a coding upstream 463761 3106237 ~ 3158919 (-)
XLOC_016076 NA non-coding downstream 982205 1645559 ~ 1647983 (-)
XLOC_016069 NA non-coding downstream 1224035 1405511 ~ 1406153 (-)
XLOC_016090 FO818692.1 non-coding upstream 483482 3125958 ~ 3126074 (-)
XLOC_016092 CU633991.2 non-coding upstream 769600 3412076 ~ 3416207 (-)
XLOC_016095 NA non-coding upstream 877107 3519583 ~ 3520166 (-)
XLOC_016100 NA non-coding upstream 1471535 4114011 ~ 4118815 (-)
XLOC_016102 FO704866.1 non-coding upstream 1928537 4571013 ~ 4571103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000098_00241279_00267336 SERBP1B coding CI01000098 null 240975 ~ 268330 (-)