XLOC_016085 (usp14)


Basic Information

Item Value
gene id XLOC_016085
gene name usp14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 2790573 ~ 2813259 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031760
AAATCGCTCGTCGAGCTCATCGATCTGGTCATCATGCAGTTGCAGCGTCATTGTGGGCTGCCGTTTGAATGAAGTTAGTAGACACACAAATCTTCCGCATCCCATCGTAAACCCTTTGGATTTGTGCTGTGTTTAAGGACAAGCAGACAGAAAGATGCCCGTATTTACAGTGAATGTGAAATGGGGAAAGGAGAAGTTTGATGCGGTGGAGCTGAACACAGAGGAGCCGCCCATGGTGTTCAAAGCCCAGCTGTTCGCTCTAACAGGAGTTCAGCCAGAGAGACAGAAAGTCATGGTGAAAGGCGGGACACTGAAGGATGATGAGTGGGGCAATATCAAGTTGAAAAATGGCATGACTCTTCTGATGATGGGCTCTGCTGATGCTCTTCCCGAGGAGCCTGTCGTTCGACCCATGTTTGTAGAGGACATGACAGAGGAGCAGCTCGCATCTGCAATGGAGTTGCCTTGTGGATTGACAAATCTGGGCAACACGTGCTACATGAACGCAACAGTGCAGTGTTTACGCTCTGTCCCAGAGCTCAAAGGTGCTCTCAGGAGGTACTCCGGTGCCTTGCGGTCTTCTGGAGCTAACGCACCTTCCCAGTACATCACAGCAGCTCTGCGTGATTTGTATGAGTCCATGGACAAGACCTCTTCAAGCATTCCACCCATCATTCTCCTGCAGTTCCTGCACATGGCCTTCCCACAGTTTGCAGAAAAAGGAGACCAGGGCCAGTACCTCCAACAGGATGCCAATGAGTGCTGGGTCCAGGTTATGCGGGTCCTTCAGCAGAAATTAGAACCTCAAGAACCAGAAACCCCAATGGAGACTGATGGCGATAGTGCAGCTGCTGCCTCCACAAAAAAGAAGAGTTTCATTGATCAGTATTTTGGGGTTGAGTTTGAAACTTCTATGAAATGTACCGAGGCGGAGGATGAGGAACCGACTAAAGGCACAGAGAGCCAGCTTCAGCTCAGCTGCTTCATCAACCAGGAAGTCAAATATCTCGCCACTGGACTGCGATTGAGGCTACAGGAGGACATCACAAAGTTCTCTCCATCTTTACAGAGAAATGCCCTCTACATCAAATCATCCAAAATCAGCCGTCTCCCGGCGTACCTCACAGTTCAGATGGTCCGGTTCTTTTATAAGGAAAAGGAGTCTGTGAATGCCAAAGTACTAAAGGATGTCAAGTTTCCTCTTATGCTGGACGTGTACGAGCTGTGCACATCTGAGCTGCAGGAGAAGATGGTTTCTCTGAGGTCCAAGTTTAAGGAGATGGAGGACAAGAAACTGGAGAAGCAACAGCAGTCTGAACCGAATAAGAAGCCTGGTGCTCTAAAGGAGACAAAATATGAACCTTTTAGTTTTCCCGATGACTTGGGCTCCAACAACAGTGGCTACTATGAACTGCAAGCTGTTCTGACGCATCAGGGCCGATCCAGCTCATCTGGCCATTATGTCGCCTGGGTTAAAAGGAAAGAAGACGAATGGGTGAAGTTTGACGATGATAAAGTCAGCGTGGTGACGCCAGAGGACATCTTGAAGCTGTCCGGAGGTGGAGACTGGCATATAGCGTACGTCCTGCTGTACGGCCCTCGACGTCTGGAAATGCTCGAGTAACGCTGAAGAAACCGTAAATGCCATTTCAGAGCACTGTCTGTATAGATGTGCAAAATAAATTTCTCGTGTCTTTAAAAACATGACCTTAATATTTTCTAAACCGCATCAACACAAGCGGCATGTCGGTTGAGGGGGGTTTTCCCTCCCTTTCACGGAGGAAAGATCGCTGGACCTGATGATCCTTAATTGgactttatttttgatttgtaaTGTTTTCTATATGCATTTTTAAGCCTGTGTCCACTCAATAGACAGCATCCCGGGAGAAGTAGTGACCGTATTAAAAGATCTTCTTGACCTAAAATGGAGGTTGAACTCATCCAAAGAAACCCGAGGCTCGCGAGGACGTGTGTTGTGTAGATTGAAGTGTAATAATCGATGGCTGATCTGATATGGAAGCACTTTGAGGATGTCTTTATGCTCAGTCACTGCTTCTGTCTTCTAGCCTACCATGCAGCAAATGTAAACTCATCTGTCCCTAAATACAATCAGAGAAAAACGAGGGAGAATTCTTTGTTATTGACTGCTCGCTGTTCACAAACGGTGTGAAAATAAAGCCACtgacaaacatttttt

Function

symbol description
usp14 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome complex. Predicted to be active in nucleus. Orthologous to human USP14 (ubiquitin specific peptidase 14).

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-7676 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome complex. Predicted to be active in nucleus. Orthologous to human USP14 (ubiquitin specific peptidase 14).

Ensembl:

ensembl_id ENSDARG00000025889

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031760 True 2200 mRNA 0.47 16 2790573 2813259

Neighbor

gene id symbol gene type direction distance location
XLOC_016084 serbp1b coding downstream 148097 2630188 ~ 2642476 (-)
XLOC_016083 CABZ01088149.1 coding downstream 166590 2621400 ~ 2623983 (-)
XLOC_016082 NA coding downstream 296273 2485435 ~ 2494300 (-)
XLOC_016080 pth1r coding downstream 339392 2290148 ~ 2451181 (-)
XLOC_016081 dre-mir-460 coding downstream 489139 2301358 ~ 2301434 (-)
XLOC_016086 si:ch1073-82l19.1 coding upstream 114204 2927463 ~ 2957970 (-)
XLOC_016087 guk1a coding upstream 213543 3026802 ~ 3045863 (-)
XLOC_016088 arf1 coding upstream 249478 3062737 ~ 3077027 (-)
XLOC_016089 wnt3a coding upstream 292978 3106237 ~ 3158919 (-)
XLOC_016090 FO818692.1 coding upstream 312699 3125958 ~ 3126074 (-)
XLOC_016079 CU929426.1 non-coding downstream 617934 2171371 ~ 2172639 (-)
XLOC_016076 NA non-coding downstream 1142590 1645559 ~ 1647983 (-)
XLOC_016069 NA non-coding downstream 1384420 1405511 ~ 1406153 (-)
XLOC_016092 CU633991.2 non-coding upstream 598817 3412076 ~ 3416207 (-)
XLOC_016095 NA non-coding upstream 706324 3519583 ~ 3520166 (-)
XLOC_016100 NA non-coding upstream 1300752 4114011 ~ 4118815 (-)
XLOC_016102 FO704866.1 non-coding upstream 1757754 4571013 ~ 4571103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000098_00438241_00447948 USP14 coding CI01000098 null 438241 ~ 448016 (+)
bowfin (Amia calva) AMCG00019286 usp14,LOC106569325 coding CM030124.1 CM030124.1 12455079 ~ 12463992 (-)