XLOC_016089 (wnt3a)


Basic Information

Item Value
gene id XLOC_016089
gene name wnt3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 3106237 ~ 3158919 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031767
ATGATATATCTTGGATATTTCCTGTTCCTTTTTTGTGGGCTCACGCGTGTCATGGCAAGCTACCCGATATGGTGGTCTCTGGCGGTGGGACACCAGTACACCTCTCTGGGTACGCAGCCCATAATGTGTAGCTCAATTCCTGGCCTGGTCCCCAAACAGCTCCGCTTCTGCCGCAACTACGTGGAGATCATGCCTAGCGTGGCCGAGGGCGTCAAAATCGGCATCCAGGAGTGTCAGCATCAGTTTCGTGGACGCCGATGGAACTGCACTACTATCAACGACAAGCTGGCCATCTTCGGACCAGTGCTGGATAAAGagaaagaaagaaagataggtTTTAAGCAagcaaaggCCACCAGAGAATCAGCGTTCGTGCATGCTATAGCCTCGGCGGGGGTAGCCTTCGCTGTGACACGGGCTTGTGCGGAGGGCTCAGCCACAATCTGCGGCTGTGACAGCCGGAGGAAAGGACCGCCGGGCGAGGGCTGGAAGTGGGGTGGCTGCAGTGAGGATGTGGAGTTCGGCAGCATGGTGTCCCGAGAGTTTGCTGATGCCCGCGAGAATCGCCCTGATGCCCGCTCTGCTATGAATCGACACAACAATGAAGCTGGACGTTCGTCAATCACTGACCACATGTACCTGAAATGCAAGTGTCACGGGCTTTCGGGCAGCTGCGAGGTGAAAACCTGCTGGTGGTCTCAGCCGGACTTCCGGGTGATCGGCGACTACATGAAGGACAAGTACGACAGCGCATCGGAAATGGTGGTTGAGAAACATCGGGAATCCCGAGGTTGGGTTGAAACCCTACGGCCAAAGTACCCCTACTACAAACCACCAACAGAAACCGACCTCGTCTACTATGAAAGCTCGCCCAACTTCTGTGAACCCAACCCAGAGACCGGTTCCTTCGGCACACGTGACCGTACATGTAACCTGACGTCGCACGGCATAGACGGCTGCGATTTGCTGTGCTGCGGCAGAGGTCACAACACTCGAACTGAGAAGCGCAAAGAAAAGTGCCACTGCATTTTCCACTGGTGCTGCTACGTGAGCTGTCAGGAGTGTACGCGAGTCTACGATGTTCACACCTGCAAGTAA

Function

symbol description
wnt3a Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within several processes, including chordate embryonic development; post-anal tail morphogenesis; and thalamus development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including brain; hindbrain neural rod; neural keel; neural tube; and paraxial mesoderm. Orthologous to human WNT3A (Wnt family member 3A).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0021794 thalamus development biological_process
GO:0007498 mesoderm development biological_process
GO:0001756 somitogenesis biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0007275 multicellular organism development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0060026 convergent extension biological_process
GO:0030903 notochord development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005109 frizzled binding molecular_function
GO:0005125 cytokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-001106-1 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within several processes, including chordate embryonic development; post-anal tail morphogenesis; and thalamus development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including brain; hindbrain neural rod; neural keel; neural tube; and paraxial mesoderm. Orthologous to human WNT3A (Wnt family member 3A).

Ensembl:

ensembl_id ENSDARG00000058822

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031767 True 1098 mRNA 0.55 5 3106237 3158919

Neighbor

gene id symbol gene type direction distance location
XLOC_016088 arf1 coding downstream 29210 3062737 ~ 3077027 (-)
XLOC_016087 guk1a coding downstream 60374 3026802 ~ 3045863 (-)
XLOC_016086 si:ch1073-82l19.1 coding downstream 148267 2927463 ~ 2957970 (-)
XLOC_016085 usp14 coding downstream 292978 2790573 ~ 2813259 (-)
XLOC_016084 serbp1b coding downstream 463761 2630188 ~ 2642476 (-)
XLOC_016091 snap47 coding upstream 228471 3387390 ~ 3403793 (-)
XLOC_016092 CU633991.2 coding upstream 253157 3412076 ~ 3416207 (-)
XLOC_016093 iba57 coding upstream 257764 3416683 ~ 3419890 (-)
XLOC_016094 cyp8b1 coding upstream 276969 3435888 ~ 3437862 (-)
XLOC_016095 NA coding upstream 360664 3519583 ~ 3520166 (-)
XLOC_016082 NA non-coding downstream 611937 2485435 ~ 2494300 (-)
XLOC_016081 dre-mir-460 non-coding downstream 804803 2301358 ~ 2301434 (-)
XLOC_016079 CU929426.1 non-coding downstream 933598 2171371 ~ 2172639 (-)
XLOC_016076 NA non-coding downstream 1458254 1645559 ~ 1647983 (-)
XLOC_016069 NA non-coding downstream 1700084 1405511 ~ 1406153 (-)
XLOC_016100 NA non-coding upstream 955092 4114011 ~ 4118815 (-)
XLOC_016102 FO704866.1 non-coding upstream 1412094 4571013 ~ 4571103 (-)
XLOC_016105 CU929154.1 non-coding upstream 1653775 4812694 ~ 4814272 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000323_00058863_00066027 WNT3A, WNT3A.L coding CI01000323 null 58414 ~ 66027 (-)