XLOC_016091 (snap47)


Basic Information

Item Value
gene id XLOC_016091
gene name snap47
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 3387390 ~ 3403793 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031769
TGCTTGGGCTGTTTACATCGCTATAACACAGCAGCGAACTATAATCTGATATTTGCTGATATTTCTTCTGATTTGGCGTTTTAATTAGATGTAGCAGGAAACACTAAAGTAGTGCAGCAAATGTCTCGCATCCGAGAACAATTTGCCTCGCTGCAAACATATCAAATCAACTCAACTTTACAATGTGAAGGGATATTGTTTATCCCAATGCGTACTTTACGTCACACCTTGCTGTAGCTGCCACTTTCAATTCTGAAGACATCCTAAAAGGTGAGCCTCCGTAAGTTAGGGCATTGCCAAATCATCTCCAAAAGCATGAGTCAGGAGCCTTCAATTCATACCTGGCCTGGCTCTTATTACATCAACAGCGAGAAACGCTGGGCCAGTGGCGTTCTCTCCTTATCTCGCACCACCCTCCGCTTCGCCTCTGAGCAAAAACAGGAGAGCCTGATGAGCCTGAAGCTCTCGCGCATCATGGAGATCAAGATGGAGTCCTCCAGCATCATCTTCAGCGCTCTCACTGTGCTGGAGCAGGGAAACCTCAAGCACTGGTTTGGGTCTCTCAGGCCGTGCCGTAATGCGGTCTATCATGTTCTAGAGCACTTCTGGAGGGAGCGTCTGCTGTCTCCTTCAGAGCCACAAGGGGCTGAAGCCCCTCTCAGTAAAGGCCAGGAGCTGATCAGCCTGATTTCCGGAGCCCAGCGGAGGCTTGAGGATACTGGGAAAGTGCTGAACCACCAGGGAGAGCAGTTCGACAACATGATTCAAGGCCTGGACAAGATCGAGTCAGACCTGACCGTGGCAGATAAGCTACTCTCTGAACTCGAGTGTCCGTCTTGGTGGCCTTTTAGTAAAATGCCATGGAGGAGCCATCAGGAGGCCAAGTCTGAGGCAGCTGCCAAAGCAGCCTGTACCAAAGGCTCAGGCAAGATCCAAAAAGTCATAGTCAGCATTCCAGCTATTGTCTTCCGTGACGGAAACACTGGAAACATGAAACCAGGTAGCCTGACTCTGTTGGTGTCTTCTCTGGAGGTCCGAGAAGCAAACGGGCAGCTCCTGCATTGCTTCGAGAAGGAAGAGGTGGACGATATTCATGTGTTCAACCCCTACGAGATCAGCATTCGCCAGCGCTTCATCGGAAAACCTGACATCTGCTTCCGACTTCTGTCTGCCAGGATGACCGAAGCTCTATCTGTGTTGGAGATGCAGTACAAGAAGAAGGTCGAGGTCACACGCGACTACGCTGTGTTTCGGTCGACTTCGGCAACCACACCAGAGAGCCCAGAAAGTGGAGGAAACGTTTGGGCTGCAGGTCATGGCCAGGACACAGAGGTGCCAGTGGAGGTGCCTGCTGGAGAACTGACGCAACTGCAGCTTCAGGTGCTTCAGCCCACTGTTACTGAGGCGGAGGCGCAGGAGCTAAAACAGATGCTCCAGCAGCTGAAGAATCTGGCTCTGGAGGCTGAGACGGAACTGGAGCGTCAGGACGAGGCTCTGGACGTGTTGAGCTGCTCTACTGACCACGCCACCATGAACATTAACAGACACACTCGCCGCATGAGGAAACTGCTGTGAACCCAACGTCAACAGATTAATGGTCAACATACGGTAAATCTGCGACCTACAACCTAAATCTGCTCATTTTGCATGGCCTGGCATCCTCACATCATCGTAATAAAAGAGTGATCGATGGCACAATTTGAATACTGTAATCAATTTGTAGTTGTTATGTGACATCTCAGTAACAAGATTCTGTACATTGTCAAACCCTTAACAGTAATCctacggtggctgagagagctcaaatgtgctgcaagttaataaaacatacaaatgcAATTTGACAACACACATCCTTCCgcattctcacaacacatgcaaatacagaaacacactgcaaatagcacagacggTAACGTAAATTTGTCTGGGGACGCCAATAAGTGACGAagcagagtttttttttgtttattttaacatcctgatcttacagttacagttgaagtcagaattattagccccccttagaaaactttttaaaatatttctcaaatgatgtttaaagggccatgaaacccccttgtttcagcagggttttttacacctactttggaaaaagtcaggaaagtgggcgtgtcctgctctgtttaggggggagtgtcagaggagg
>TCONS_00031770
AAACATTCACCCTTTGCTTGGGCTGTTTACATCGCTATAACACAGCAGCGAACTATAATCTGATATTTGCTGATATTTCTTCTGATTTGGCGTTTTAATTAGATGTAGCAGGAAACACTAAAGTAGTGCAGCAAATGTCTCGCATCCGAGAACAATTTGCCTCGCTGCAAACATATCAAATCAACTCAACTTTACAATGTGAAGGGATATTGTTTATCCCAATGCGTACTTTACGTCACACCTTGCTGTAGCTGCCACTTTCAATTCTGAAGACATCCTAAAAGGTCATGGCCAGGACACAGAGGTGCCAGTGGAGGTGCCTGCTGGAGAACTGACGCAACTGCAGCTTCAGGTGCTTCAGCCCACTGTTACTGAGGCGGAGGCGCAGGAGCTAAAACAGATGCTCCAGCAGCTGAAGAATCTGGCTCTGGAGGCTGAGACGGAACTGGAGCGTCAGGACGAGGCTCTGGACGTGTTGAGCTGCTCTACTGACCACGCCACCATGAACATTAACAGACACACTCGCCGCATGAGGAAACTGCTGTGAACCCAACGTCAACAGATTAATGGTCAACATACGGTAAATCTGCGACCTACAACCTAAATCTGCTCATTTTGCATGGCCTGGCATCCTCACATCATCGTAATAAAAGAGTGATCGATGGCACAATTTGAATACTGTAATCAATTTGTAGTTGTTATGTGACATCTCAGTAACAAGATTCTGTACATTGTCAAACCCTTAACAGTAATCctacggtggctgagagagctcaaatgtgctgcaagttaataaaacatacaaatgcAATTTGACAACACACATCCTTCCgcattctcacaacacatgcaaatacagaaacacactgcaaatagcacagacggTAACGTAAATTTGTCTGGGGACGCCAATAAGTGACGAagcagagtttttttttgtttattttaacatcctgatct
>TCONS_00033760
TGCTTGGGCTGTTTACATCGCTATAACACAGCAGCGAACTATAATCTGATATTTGCTGATATTTCTTCTGATTTGGCGTTTTAATTAGATGTAGCAGGAAACACTAAAGTAGTGCAGCAAATGTCTCGCATCCGAGAACAATTTGCCTCGCTGCAAACATATCAAATCAACTCAACTTTACAATGTGAAGGGATATTGTTTATCCCAATGCGTACTTTACGTCACACCTTGCTGTAGCTGCCACTTTCAATTCTGAAGACATCCTAAAAGGTGAGCCTCCGTAAGTTAGGGCATTGCCAAATCATCTCCAAAAGCATGAGTCAGGAGCCTTCAATTCATACCTGGCCTGGCTCTTATTACATCAACAGCGAGAAACGCTGGGCCAGTGGCGTTCTCTCCTTATCTCGCACCACCCTCCGCTTCGCCTCTGAGCAAAAACAGGAGAGCCTGATGAGCCTGAAGCTCTCGCGCATCATGGAGATCAAGATGGAGTCCTCCAGCATCATCTTCAGCGCTCTCACTGTGCTGGAGCAGGGAAACCTCAAGCACTGGTTTGGGTCTCTCAGGCCGTGCCGTAATGCGGTCTATCATGTTCTAGAGCACTTCTGGAGGGAGCGTCTGCTGTCTCCTTCAGAGCCACAAGGGGCTGAAGCCCCTCTCAGTAAAGGCCAGGAGCTGATCAGCCTGATTTCCGGAGCCCAGCGGAGGCTTGAGGATACTGGGAAAGTGCTGAACCACCAGGGAGAGCAGTTCGACAACATGATTCAAGGCCTGGACAAGATCGAGTCAGACCTGACCGTGGCAGATAAGCTACTCTCTGAACTCGAGTGTCCGTCTTGGTGGCCTTTTAGTAAAATGCCATGGAGGAGCCATCAGGAGGCCAAGTCTGAGGCAGCTGCCAAAGCAGCCTGTACCAAAGGCTCAGGCAAGATCCAAAAAGTCATAGTCAGCATTCCAGCTATTGTCTTCCGTGACGGAAACACTGGAAACATGAAACCAGGTAGCCTGACTCTGTTGGTGTCTTCTCTGGAGGTCCGAGAAGCAAACGGGCAGCTCCTGCATTGCTTCGAGAAGGAAGAGGTGGACGATATTCATGTGTTCAACCCCTACGAGATCAGCATTCGCCAGCGCTTCATCGGAAAACCTGACATCTGCTTCCGACTTCTGTCTGCCAGGATGACCGAAGCTCTATCTGTGTTGGAGATGCAGTACAAGAAGAAGGTCGAGGTCACACGCGACTACGCTGTGTTTCGGTCGACTTCGGCAACCACACCAGAGAGCCCAGAAAGTGGAGGAAACGTTTGGGCTGCAGGTCATGGCCAGGACACAGAGGTGCCAGTGGAGGTGCCTGCTGGAGAACTGACGCAACTGCAGCTTCAGGTGCTTCAGCCCACTGTTACTGAGGCGGAGGCGCAGGAGCTAAAACAG
>TCONS_00033761
AAACATTCACCCTTTGCTTGGGCTGTTTACATCGCTATAACACAGCAGCGAACTATAATCTGATATTTGCTGATATTTCTTCTGATTTGGCGTTTTAATTAGATGTAGCAGGAAACACTAAAGTAGTGCAGCAAATGTCTCGCATCCGAGAACAATTTGCCTCGCTGCAAACATATCAAATCAACTCAACTTTACAATGTGAAGGGATATTGTTTATCCCAATGCGTACTTTACGTCACACCTTGCTGTAGCTGCCACTTTCAATTCTGAAGACATCCTAAAAGGTCATGGCCAGGACACAGAGGTGCCAGTGGAGGTGCCTGCTGGAGAACTGACGCAACTGCAGCTTCAGGTGCTTCAGCCCACTGTTACTGAGGCGGAGGCGCAGGAGCTAAAACAG
>TCONS_00031771
CATTCTTCTGTGAATTTTTTGGAGAACATGCATGGCTGATTCGGGATCAGGTAGTTCTTGAAGAATTTGGAGTAGGGTATTTCTCTTTCTATGTACTCGATGAAATGAGAGGAGCAGTGCTGTTGGTGGATCTGCCTGGGCAGTTTGACCAAGCTGGAGCAGCTAtgaaagGTGAGCCTCCGTAAGTTAGGGCATTGCCAAATCATCTCCAAAAGCATGAGTCAGGAGCCTTCAATTCATACCTGGCCTGGCTCTTATTACATCAACAGCGAGAAACGCTGGGCCAGTGGCGTTCTCTCCTTATCTCGCACCACCCT

Function

symbol description
snap47 Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in synaptic vesicle fusion to presynaptic active zone membrane and synaptic vesicle priming. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Orthologous to human SNAP47 (synaptosome associated protein 47).

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0016082 synaptic vesicle priming biological_process
GO:0006906 vesicle fusion biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-060825-140 Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in synaptic vesicle fusion to presynaptic active zone membrane and synaptic vesicle priming. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Orthologous to human SNAP47 (synaptosome associated protein 47).

Ensembl:

ensembl_id ENSDARG00000063445

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031769 False 2170 mRNA 0.48 6 3387390 3403020
TCONS_00031770 False 960 processed_transcript 0.44 4 3387572 3403034
TCONS_00033760 False 1428 lncRNA 0.51 4 3394950 3403020
TCONS_00033761 False 400 lncRNA 0.45 2 3394950 3403034
TCONS_00031771 True 317 mRNA 0.48 2 3401275 3403793

Neighbor

gene id symbol gene type direction distance location
XLOC_016089 wnt3a coding downstream 228471 3106237 ~ 3158919 (-)
XLOC_016090 FO818692.1 coding downstream 261316 3125958 ~ 3126074 (-)
XLOC_016088 arf1 coding downstream 310363 3062737 ~ 3077027 (-)
XLOC_016087 guk1a coding downstream 341527 3026802 ~ 3045863 (-)
XLOC_016086 si:ch1073-82l19.1 coding downstream 429420 2927463 ~ 2957970 (-)
XLOC_016092 CU633991.2 coding upstream 8283 3412076 ~ 3416207 (-)
XLOC_016093 iba57 coding upstream 12890 3416683 ~ 3419890 (-)
XLOC_016094 cyp8b1 coding upstream 32095 3435888 ~ 3437862 (-)
XLOC_016095 NA coding upstream 115790 3519583 ~ 3520166 (-)
XLOC_016096 pter coding upstream 199796 3603589 ~ 3616363 (-)
XLOC_016082 NA non-coding downstream 893090 2485435 ~ 2494300 (-)
XLOC_016081 dre-mir-460 non-coding downstream 1085956 2301358 ~ 2301434 (-)
XLOC_016079 CU929426.1 non-coding downstream 1214751 2171371 ~ 2172639 (-)
XLOC_016076 NA non-coding downstream 1739407 1645559 ~ 1647983 (-)
XLOC_016100 NA non-coding upstream 710218 4114011 ~ 4118815 (-)
XLOC_016102 FO704866.1 non-coding upstream 1167220 4571013 ~ 4571103 (-)
XLOC_016105 CU929154.1 non-coding upstream 1408901 4812694 ~ 4814272 (-)

Expression


Co-expression Network