XLOC_016097 (mmp16b)


Basic Information

Item Value
gene id XLOC_016097
gene name mmp16b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 3630307 ~ 3678029 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031778
TCAATATAGAAAAAAAGCAACCTGCCAGTTCGCCAAGGTAGCGTTTCAAAGCAGGAGAAATGTCTCGAAATAGTGCCTCGGATATTAAAGATGGATTGCGGATTGCCAGAGAAATGACACAATGTGCGGACGCCGATGCTTCTCCGCGCTGCGATCGTTTCATCTTCGGTCCAAAATGCCACTTGCTTAACTGACATACGAGGATATAGAGACACAAATAGTCGCCTAAAACGGACTATCAAGCGAATTTACAAATATGAACGTTACGCTGCTGAAAAGGCGAAGGCTGGACTGTGTGTATGCGCTGCTGTTCTGGCTCCATAACGCTATGTGGATGTGCCGTTCAGCGGCCGAAGAGCATCAATTCAGCGTTGAGGTGTGGTTGCAGAAGTATGGCTACCTTCACCCTACACCACCCAACATGGCCGCCCAGCGATCAGCCCAAACCATGCATTCTGCTATTGCTGCCATGCAGCACAAGTATGGACTAAACATCACAGGGACTCTAAACAAGTATACTATAGACTGGATGAAAAAGCCCAGATGTGGAGTACCGGACCAGCTGAAAGCCGGATCCGCATCCCGCAGGAAGAAGCGATATGCACTCACCGGACAGAAGTGGCAGCGTGAACACATCTCATACAGCATTAAAAACGTCACTCCTAAAGTGGGAAATCAAGAAACCCACGATGCGATCCGGCGGGCGTTTGACGTGTGGCAGGGAGTGACGCCGCTGCGCTTCGAGGCCGTGCCCTTCCGTGACCTGGACAGCGGCAAGCGGGACGTGGACATCACCATCATCTTCGCCTCGGGTTTCCACGGCGACAGCTCTCCTTTTGACGGAGAGGGAGGATTCCTGGCTCATGCCTATTTCCCAGGGCCGGGCATCGGGGGCGACACACACTTCGACTCGGATGAACCCTGGACGCTGGGCAACCCAAACCATGATGGTGAGAGAACGGCAGGTAATGATCTGTTCCTCGTGGCGGTTCACGAGCTTGGTCATGCTTTAGGACTGGAACATTCCAGTGACCCGACGGCTATAATGGCTCCATTTTATCAGTATATGGACACTGAGAGCTTCAAACTGCCTCATGATGATCTTCAGGGCATCCAGAAAATATATGGTCCTCCAAACAAGAACCCTCAGCCCACTCGACTGCTGACGACGGCGACTCCTCCTCGCCTGCACCTACCGTCTGACCCGCGTAAACATGAACGTAGTCGCCCACACCGGCCTCCGCAGAAAAACAAACCCAGCCATCCAAACTCCAAACCCGACATCTGCGACGGAGGATTCAACACGCTGGCCATCCTGCGCAATGAGCTCTTCGTCTTCAAGGATCAGTGGTTCTGGAGGGTGAGAGATAATTCTGTGGTGCCTGGATACCCGATGCAGATCAGCTACTTCTGGAGAGGTTTGCCTCCCAAGATTGATGCCGTCTACGAAAACAGCGAGGGGAAGTTCGTCTTCTTCAAAGGCAACCGGTTCTGGGTGTTTAAGGATACAACTCTGCAGCCCACATATCCTCAGGACATTTCTCTTTTTGGCAGTGGAATGCCCACGCAGAGCATCGAAACAGCTGTTTGGTGGGAAGACGTGGCCAAAACCTACTTCTTCAAAGGGGATAGGTACTGGAGGTACAATGAGGATATGAGGACGATGGACCCTGGATATCCACAACCTATTACTGTGTGGAAAGGCATCCCAGACTCTCCACAGGGAGCATTCGTGGACAAAGCCAATGGATTCACATACTTCTACAAGGGGAAGGAGTACTGGAAGTTCAACAATCAGCGACTGAGAGTAGAGCCAGGCTACCCTCGATCCATCCTGCGAGACTTCATGGGCTGTGACGGTCTGCCCACTGACCCCGACTGGGACTGGAGCCCTCCGCAAGAAGAGGAACCACCCCAATTTGACGACGACAATGTCGATATCGTTCTGAAATTAGAAAGCAGCGGCGGAGCAGAAAAAGCAGTAGCCATCGCCATCCCATGTGTGTTGGCGCTGTGCATGATGGTCCTGCTTTACACTGTGTTTCGCTTCAAGAGGAAGGACACGCAGCGCCACATACTGTACTGCAAGAGATCCATGCAGGAGTGGGTTTGAGACATAAATGACCCAATGTTAATACGGTCTTCATGATAAAACCCCCTCGGAATTTTTGACTTCTCTTGATGCCGCTTTGTTGGCAGAAGCAAAGACGAAAACAACTTTATCTGCCTTCAAAggtggcaatgtgtgtgtgttgtttttttttttgtatggtccGTGTGGCCTTGGGAGACCACTTTGGTGACTGAAGCCCAATGCGAGAGTACATCGTTACTCTACAAACCATCAACTTTTCAATTGACTTTGAGAGCTATTTATCTTCGAACTGCAGATGctccataatgtgtgtgtgtcactccGAAATACTTGCTCGTGTGGAGAAAAAAACTGATACCCAAAACCAAATATGCCCTTAGTGTCCAAAGAGGACTGCTTCATTCACGTGGGATATTTCTGAGATGATTATCCATCATTGTTTGAGTTCCGTTCCGTTTTGCAGGATCAGTGGGGAAATCAGAAGGGACGTTGACGTGTAACACCGGGGCTACATGCAATATTTCGTCGAATGCCTTAAATCAcatattgcatttaattttagtgtgtgtgttcgtgtacATGTGCCTGTGCGAATGTGTCTTTTTGTCACTCTTTTTTTCACACTGCTGACCGGCAGAAACTTGCGGTAGGATTTAAAGTGCCACTGACCTCTGGAAACACTGAAAAGCCAGTACACGCATGACTCTGAAATGTAGAAACTGAGAGCTTTTGATTACATCATacacaatcaaacaaaacaatGGTATTCAGCTGAAGTACCAAATGAACCTTCATGTATCTCATAAGAAGCAACAGATCATCAAAAATACTAAATTGTCAAAGCTATATAAAAGCAACAGAGTttgaaatgcagtatttaaactaCATGAAGGAAATACTTGTGCTTGCAAGGCAGCAAGAAAGCagtattaaagtttaaagtatgtttaaagagttcacacttagctgatgattgattataaagcttgtat
>TCONS_00031779
TGGGGTGTTTATAAGGAGTCCGGCATTCTGTCTAGGAGAGCTCGATTAGCCGGACGTCTCTGCTTGGCgcttttgatttgttttagttGTGTGTGGTTGCAGAAGTATGGCTACCTTCACCCTACACCACCCAACATGGCCGCCCAGCGATCAGCCCAAACCATGCATTCTGCTATTGCTGCCATGCAGCACAAGTATGGACTAAACATCACAGGGACTCTAAACAAGTATACTATAGACTGGATGAAAAAGCCCAGATGTGGAGTACCGGACCAGCTGAAAGCCGGATCCGCATCCCGCAGGAAGAAGCGATATGCACTCACCGGACAGAAGTGGCAGCGTGAACACATCTCATACAGCATTAAAAACGTCACTCCTAAAGTGGGAAATCAAGAAACCCACGATGCGATCCGGCGGGCGTTTGACGTGTGGCAGGGAGTGACGCCGCTGCGCTTCGAGGCCGTGCCCTTCCGTGACCTGGACAGCGGCAAGCGGGACGTGGACATCACCATCATCTTCGCCTCGGGTTTCCACGGCGACAGCTCTCCTTTTGACGGAGAGGGAGGATTCCTGGCTCATGCCTATTTCCCAGGGCCGGGCATCGGGGGCGACACACACTTCGACTCGGATGAACCCTGGACGCTGGGCAACCCAAACCATGATGGTAATGATCTGTTCCTCGTGGCGGTTCACGAGCTTGGTCATGCTTTAGGACTGGAACATTCCAGTGACCCGACGGCTATAATGGCTCCATTTTATCAGTATATGGACACTGAGAGCTTCAAACTGCCTCATGATGATCTTCAGGGCATCCAGAAAATATATGGTCCTCCAAACAAGAACCCTCAGCCCACTCGACTGCTGACGACGGCGACTCCTCCTCGCCTGCACCTACCGTCTGACCCGCGTAAACATGAACGTAGTCGCCCACACCGGCCTCCGCAGAAAAACAAACCCAGCCATCCAAACTCCAAACCCGACATCTGCGACGGAGGATTCAACACGCTGGCCATCCTGCGCAATGAGCTCTTCGTCTTCAAGGATCAGTGGTTCTGGAGGGTGAGAGATAATTCTGTGGTGCCTGGATACCCGATGCAGATCAGCTACTTCTGGAGAGGTTTGCCTCCCAAGATTGATGCCGTCTACGAAAACAGCGAGGGGAAGTTCGTCTTCTTCAAAGGCAACCGGTTCTGGGTGTTTAAGGATACAACTCTGCAGCCCACATATCCTCAGGACATTTCTCTTTTTGGCAGTGGAATGCCCACGCAGAGCATCGAAACAGCTGTTTGGTGGGAAGACGTGGCCAAAACCTACTTCTTCAAAGGGGATAGGTACTGGAGGTACAATGAGGATATGAGGACGATGGACCCTGGATATCCACAACCTATTACTGTGTGGAAAGGCATCCCAGACTCTCCACAGGGAGCATTCGTGGACAAAGCCAATGGATTCACATACTTCTACAAGGGGAAGGAGTACTGGAAGTTCAACAATCAGCGACTGAGAGTAGAGCCAGGCTACCCTCGATCCATCCTGCGAGACTTCATGGGCTGTGACGGTCTCCCTCCGCAAGAAGAGGAACCACCCCAATTTGACGACGACAATGTCGATATCGTTCTGAAATTAGAAAGCAGCGGCGGAGCAGAAAAAGCAGTAGCCATCGCCATCCCATGTGTGTTGGCGCTGTGCATGATGGTCCTGCTTTACACTGTGTTTCGCTTCAAGAGGAAGGACACGCAGCGCCACATACTGTACTGCAAGAGATCCATGCAGGAGTGGGTTTGA

Function

symbol description
mmp16b Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process; extracellular matrix organization; and skeletal system development. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix and membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human MMP16 (matrix metallopeptidase 16).

GO:

id name namespace
GO:0001501 skeletal system development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0030574 collagen catabolic process biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061009-22 Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process; extracellular matrix organization; and skeletal system development. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix and membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human MMP16 (matrix metallopeptidase 16).

Ensembl:

ensembl_id ENSDARG00000058876

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031778 False 3087 mRNA 0.48 10 3630307 3678029
TCONS_00031779 True 1785 mRNA 0.53 11 3631281 3654983

Neighbor

gene id symbol gene type direction distance location
XLOC_016096 pter coding downstream 13944 3603589 ~ 3616363 (-)
XLOC_016095 NA coding downstream 110141 3519583 ~ 3520166 (-)
XLOC_016094 cyp8b1 coding downstream 192445 3435888 ~ 3437862 (-)
XLOC_016093 iba57 coding downstream 210417 3416683 ~ 3419890 (-)
XLOC_016092 CU633991.2 coding downstream 214100 3412076 ~ 3416207 (-)
XLOC_016098 rab18b coding upstream 341509 4019538 ~ 4032732 (-)
XLOC_016099 yme1l1b coding upstream 366607 4044636 ~ 4070850 (-)
XLOC_016100 NA coding upstream 435982 4114011 ~ 4118815 (-)
XLOC_016101 adipoqb coding upstream 812575 4490604 ~ 4496358 (-)
XLOC_016102 FO704866.1 coding upstream 892984 4571013 ~ 4571103 (-)
XLOC_016090 FO818692.1 non-coding downstream 504233 3125958 ~ 3126074 (-)
XLOC_016082 NA non-coding downstream 1136007 2485435 ~ 2494300 (-)
XLOC_016081 dre-mir-460 non-coding downstream 1328873 2301358 ~ 2301434 (-)
XLOC_016105 CU929154.1 non-coding upstream 1134665 4812694 ~ 4814272 (-)
XLOC_016113 NA non-coding upstream 1771752 5449781 ~ 5453522 (-)
XLOC_016118 NA non-coding upstream 2023069 5701098 ~ 5702648 (-)

Expression


Co-expression Network