XLOC_016099 (yme1l1b)


Basic Information

Item Value
gene id XLOC_016099
gene name yme1l1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 4044636 ~ 4070850 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031781
CTTGTTTAACGTAAGAGGACACCGGTGGAGGACGTTATATGTAACTCCTGATCAATAAAATCCCCTCGTCCACAAGAGTTTGCCATCAGCTAATCGGAAATGTTTTCTCTCTCCACTACCCTACAGCCGCAGGTAACAGTCCAGCTGAGTCACCTCATCAATGCTCTGCACTCGCTGAAGGGGTCAGTGAGCAGCAATACTTCAGTCAgtcacaaacacagagagaacacgCCAGAACAAGATCTGAACAGCACCGAGCCGTCGCTGTCCCTCAGAGATTTGGGTCTGTCAGATCTCGGTCTCGTCCAGATAGATGAGCTGCTGGAGAAGCTTCTGCCTCGTGTTTCTCAGCAGGACTCGCAACTGAAGACTGTGCCAGATATCTGGAGGACTTCTCATCTCTCTTCTGACTCTTTCTTTCACAACAAACATGGGTTTTCAAGAATGGGTGGTGTCACTCCGGTGTTCTCAAGGCAAAACCAGTCTCCTCTCCAAACTCTCTGCACAGATCTCAACTATTTACCTTTGTTGGTCCAAAATCGAGGCTTTAAAACCCTGAAGTCCCGAACACGACGCCTGCAGGGAGGTTTTGAGGGTCCAGTGGAGCCTGAGGGAATTACACCGTCATTTATGAAGGGTTTCCTCACACGTGATAAAGGACCAGACGTTGAAACACTGGAAAAACtccttaaaaacaaaaatattcccGAGGGTCAACATGATGCTTTTAAGACTGGTTTTGCCGAGGGTTTCCTCAAAGCTCAGGCTCTTACACAGAGAACCCAAGAATCGCTTAGGAGGACCAGACTCATACTGTTGGTGCTTCTGCTGGTGGGCTTGTATGGACTCTCCAAAACACCTTTCTTATCAGTGCGATTCCGAACTACATCAGGCCTGGACTCTGCTGTGGACCCGGTCCAGATGAAGAACGTCACCTTTGAGCATGTGAAGGGTGTGGAGGAGGCCAAGAACGAGCTGCAGGAGGTGGTGGAGTTCCTGAGGAACCCACAGAAGTTCACCGTTTTAGGAGGAAAGCTGCCTAAAGGAATCTTGTTGGTTGGGCCTCCGGGAACAGGAAAGACCCTGTTGGCACGTGCTGTGGCGGGTGAGGCGGATGTGCCTTTCTACTACGCATCTGGATCAGAGTTTGATGAGATGTTTGTTGGAGTCGGTGCCAGTCGAATCAGAAACCTTTTCAGAGAAGCTAAAGGAAACGCTCCTTGTGTTATCTTCATTGATGAGCTGGACAGTGTCGGAGGAAAGAGGATCGAGTCTCCCATGCACCCCTATTCTAGACAGACAATCAATCAGCTGCTTGCAGAAATGGACGGGTTCAAGCCAAATGAAGGCGTCATCATAATTGGAGCAACAAACTTCCCTGAAGCTTTGGATAATGCTCTGATCCGGCCCGGTCGTTTCGATATGCAGGTCACTGTACCCAGACCAGATGTGAAGGGCCGCACAGAAATCCTCAAGTGgtaccttaaaaaaattaaagtggaCTCCGCTGTGGAGGCAGAGGTCATTGCTCGAGGAACGGTTGGCTTCTCTGGTGCCGAGCTGGAGAATCTGGTAAATCAGGCTGCACTCAAGGCTGCTGTGGACGGCAAAGACATGGTGACCATGAAGGAGCTGGAGTTTGCTAAAGACAAGATACTGATGGGGCCAGAACGCAGGAGTGCAGAGATCGACAAGAGGAATAAAGAGATCACGGCGTACCACGAGTCAGGCCATGCTATTATTGCGTACTACACCAAAGACGCCATGCCCATTAATAAAGCTACTATTATGCCCAGAGGCCCAACTTTGGGTCATGTGTCCATGCTTCCAGAGAATGACCGCTGGAGTGAAACCCGTGCTCAGCTTCTGGCTCAGATGGATGTCAGTATGGGCGGTCGAGTTGCAGAGGAGCTCATTTTTGGCAATGAAAATATCACCACAGgaGCATCAAGTGACTTTGACAGCGCTACAAAAATAGCTAAAATGATGGTGACCAGATTTGGCATGAGTGAAAAGTTGGGTGTGATGACATACAGCGACCTCACCAAGCAGAGCCCAGAAACTCAGGCAGCCATTGAACATGAAGTTCGGATACTTCTGAGGGATTCCTACGAGCGTGCTAAAGCTCTCCTGAAGTCCCGCGCTAAAGAGCACAGAAACCTGGCGGAGGCTTTACTGCGCTACGAGACATTGGATGCCAAAGAGATTCAGCTGGTCTTGGAGGGAAAGGCTATAAACAGCAGATGAAGATGCAGCCGAACCCTGAAACACATGAATGTACATATGCAACCGAGAGCTTGGTAGACCTACACTCCCCATTGGTAACGTTTGTTTTCTGAGCCAGATCTCTGAAGTGAGTCTCTAAGGAAGGCATTACAAACTCGATCCGTGACAATTTGACTCGTTTATTACATATTTCAAAGTTGTTTTTCTTCTGTACCATTGCGTTGACTATATAGGTGCTGCCTTATTTGTAGTGGTGCAGAAGCTGATGTTGAAAATAAATCCGTAAGCTGTCAAGTTCACTATAAAGTCGCCCTGTTTGAGCCGAACTAAGTTTGACCTATGAGAAATGCAACGAGTTTCTCACTAAGAGAGACTGGAATGTTTTCGAAGCACTTTGTTAGTGGAACGTTTAGCTTTATTTGTGTGTTACGTGATATAATATCATATTCTCTGCTCCCGAACAATGCTGCTTGAGAATACCTTTAGTTGGAAAATGTCAACGCTTTAAAAAAATCTGGGTTTAAAAAAACGAAACATTAACAGATATACATATATCGATAATCCTTCCCgtgaagcattttttgtttctaaaaaatgtctaatagacgtgtaaacatagtcgtcttggccaAAACAAGGCAAAATTTGGGCTGTCGTGAAAATCGAATAGATGtataagaataggccaaaactagactagtcgtcaaatagacggaaatgaatgactacacatattaAGTCCGTCTAactgatgactagtctagttttgggctattcagagatgtctattagatttataccgacagcccaagtttagccttgttttagtcaagctgtctacgtttaaatgtctattagacgtctattaaacacaaaattgtttgctgggttggGTCAAGTTTTTGTTGATTGGTTTATTTCtttaaaggagtagttcatgCAAAAGtgtaaaattctgttattaattaatcACCCTTGCGTCGTGTCAAACcactgagaccttcgttcatcttaaGAAAAcaagttaagatattttagatgaaatcctggagctctcatcctccatagacaacaaGCGTCCCGAGATGATGCTCAAAGAAAAGTACCCAAAAatagtcaaaacattccatgcaaCACCGCATTCGTGTGACtagaacactgtaaaaatgacttaTTTCACCAATATTTTTGGTTCCTTTACTGAATTTTAATATCTGTGGACCGTTCCTGattatggaggatgagagagctccaggatttcatctaaaatccattttaatttgtattctgaAAATAAACAAAGACCTCGGTGTGTTTTGAATGAAATGAGAGAGTagttaataacattttttatccATCACAGGACTATTTTAATCCAGTCTGGATCATCATGTTCTATACATCAGTTTAAATATATACACCAATCATAAGACGAAAAAGGGAGccgtatttcattcatttctcagtgattaCGTTGGGTTCACTCAGCTTTATTctacattatttattcatgtacagTAGCTTTACATCTCTACATTTACCTTGCCTCATTGTTATGTTTGCCTTTTACCCAAGCTCGTTTTAGTTGTGTATATACCGTATATATTTATAATCAATAAATTCGAAAGCGAGGATGTTGTATATAAGTGTAAAGATTGATTTTAGTCTTGAGCTCTGCCTGGGTTGTAATTGAAAATgacttcttgttttgtttgtttgatgctgtcgcACATTTATTAATGACTGGGAGCTGAACTGAATAAAAGAAACATCCCTAC

Function

symbol description
yme1l1b Predicted to enable ATP-dependent peptidase activity. Predicted to be involved in mitochondrion organization and protein quality control for misfolded or incompletely synthesized proteins. Predicted to be located in membrane. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in optic atrophy 11. Orthologous to human YME1L1 (YME1 like 1 ATPase).

GO:

id name namespace
GO:0007005 mitochondrion organization biological_process
GO:0006508 proteolysis biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0004176 ATP-dependent peptidase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-25 Predicted to enable ATP-dependent peptidase activity. Predicted to be involved in mitochondrion organization and protein quality control for misfolded or incompletely synthesized proteins. Predicted to be located in membrane. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in optic atrophy 11. Orthologous to human YME1L1 (YME1 like 1 ATPase).

Ensembl:

ensembl_id ENSDARG00000104401

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031781 True 4004 mRNA 0.43 18 4044636 4070850

Neighbor

gene id symbol gene type direction distance location
XLOC_016098 rab18b coding downstream 11904 4019538 ~ 4032732 (-)
XLOC_016097 mmp16b coding downstream 366607 3630307 ~ 3678029 (-)
XLOC_016096 pter coding downstream 428273 3603589 ~ 3616363 (-)
XLOC_016095 NA coding downstream 524470 3519583 ~ 3520166 (-)
XLOC_016094 cyp8b1 coding downstream 606774 3435888 ~ 3437862 (-)
XLOC_016100 NA coding upstream 43161 4114011 ~ 4118815 (-)
XLOC_016101 adipoqb coding upstream 419754 4490604 ~ 4496358 (-)
XLOC_016102 FO704866.1 coding upstream 500163 4571013 ~ 4571103 (-)
XLOC_016103 CABZ01063651.1 coding upstream 560485 4631335 ~ 4642407 (-)
XLOC_016104 tnk2b coding upstream 658305 4729155 ~ 4797512 (-)
XLOC_016092 CU633991.2 non-coding downstream 628429 3412076 ~ 3416207 (-)
XLOC_016090 FO818692.1 non-coding downstream 918562 3125958 ~ 3126074 (-)
XLOC_016082 NA non-coding downstream 1550336 2485435 ~ 2494300 (-)
XLOC_016081 dre-mir-460 non-coding downstream 1743202 2301358 ~ 2301434 (-)
XLOC_016105 CU929154.1 non-coding upstream 741844 4812694 ~ 4814272 (-)
XLOC_016113 NA non-coding upstream 1378931 5449781 ~ 5453522 (-)
XLOC_016118 NA non-coding upstream 1630248 5701098 ~ 5702648 (-)

Expression


Co-expression Network