XLOC_016101 (adipoqb)


Basic Information

Item Value
gene id XLOC_016101
gene name adipoqb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 4490604 ~ 4496358 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031784
AACAAAAGCAGCTGCATCGCTCTGCGGTTCCTCTCACTGCTCTGTGCTTTTGGGCCCCTTAGAGAGCAGCATGTCACTACTAAGGACAATCATTTTGGGCATCATCCTGACTGGACATCTGTGTGGAGGTCAAGACGAACTACTAGAGGACAGTTTAGAGACAGCAGTGGATGAAGTGGCCACTGAGGGAATCGAGGAGCTGGAGGAACCTGAGGAAGAGGGGTTGGATCTCAGTCCACCTGATGACAGACAGCCATGTGCCATGTGGATGGGCGGTGTTCCAGGCACACCTGGGCACAGTGGAAAACCTGGAAGAGATGGCAGAGATGGACGTGACGGACAGAGGGGCGAGAAAGGAGATCAAGGTGAAGCAGGTGAGAAAGGCGACCCTGGAGAAAAGGGAGACATAGGCAACGCAGGACCAAGAGGCTTTCCTGGCAACCCAGGCCTAAAAGGGGCTCGAGGCGAAAGTGCCTCGTCCTACCATTCAGCTTTCAGTGTAGGTCTCAGTGAGATTGTTTCCGCCACCAACGTGCCAATCCGCTTCAACAAGTTCTTCTACAACGACCAGCACCACTATGATGATGTGTCCGGAAAGTTCCGCTGCGTCCTGCCTGGAGTCTACTTCTTCACGTACCATCTGACCGTCTACACTAAAGATGCGAAGGTCAGTCTCTACAAGAACGACAAGGCCATCATGTTCACTTATGACCAGTACCAGGAGACCAATGTGGACCAGGCGTCAGGCTCTGTGATCTTGCGTTTGGAGGCAGGAGATGAAGTGTGGCTGCAGGTCTATGGAGACGAGACGGTTGGAGGAGTGTATGCTGATAATACCAATGACTCCACCTTCTCCGGTTTTCTCCTGTATCCTGTTAGTCCCGCAGAGAGACGCTGATGATTTCcttaaattatgaattatttgcCTATGTAAGTTTCAGTTTTGCGCTACGCTAGAGTCATAATTCAACACAACTTTGTATGAATGTTGAAATATTTTTGTGTCCACTATAACTACATGCAAATTACTCATTATTCTTTTCACTATGTAACATAAATGCATAGGTTAAACTAAGGTTCCCTTTCAAGGTTCctacctttatttaaaaaaaaaaaaa
>TCONS_00031785
AGCATGTCACTACTAAGGACAATCATTTTGGGCATCATCCTGACTGGACATCTGTGTGGAGGTCAAGACGAACTACTAGAGGACAGTTTAGAGACAGCAGTGGATGAAGTGGCCACTGAGGGAATCGAGGAGCTGGAGGAACCTGAGGAAGAGGGGTTGGATCTCAGTCCACCTGATGACAGACAGCCATGTGCCATGTGGATGGGCGGTGTTCCAGGCACACCTGGGCACAGTGGAAAACCTGGAAGAGATGGCAGAGATGGACGTGACGGACAGAGGGGCGAGAAAGGAGATCAAGGTGAAGCAGGTGAGAAAGGCGACCCTGGAGAAAAGGGAGACATAGGCAACGCAGGACCAAGAGGCTTTCCTGGCAACCCAGGCCTAAAAGGGGCTCGAGGCGAAAGTGCCTCGTCCTACCATTCAGCTTTCAGTGTAGGTCTCAGTGAGATTGTTTCCGCCACCAACGTGCCAATCCGCTTCAACAAGTTCTTCTACAACGACCAGCACCACTATGATGATGTGTCCGGAAAGTTCCGCTGCGTCCTGCCTGGAGTCTACTTCTTCACGTACCATCTGACCGTCTACACTAAAGATGCGAAGGTCAGTCTCTACAAGAACGACAAGGCCATCATGTTCACTTATGACCAGTACCAGGAGACCAATGTGGACCAGGCGTCAGGCTCTGTGATCTTGCGTTTGGAGGCAGGAGATGAAGTGTGGCTGCAGGTCTATGGAGACGAGACGGTTGGAGGAGTGTATGCTGATAATACCAATGACTCCACCTTCTCCGGTTTTCTCCTGTATCCTGTTAGTCCCGCAGAGAGACGCTGA

Function

symbol description
adipoqb Predicted to enable hormone activity. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Is expressed in several structures, including adipose tissue; ball; liver; notochord; and pancreas. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); cardiovascular system disease (multiple); non-alcoholic fatty liver disease; primary open angle glaucoma; and type 2 diabetes mellitus. Orthologous to human ADIPOQ (adiponectin, C1Q and collagen domain containing).

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-220 Predicted to enable hormone activity. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Is expressed in several structures, including adipose tissue; ball; liver; notochord; and pancreas. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); cardiovascular system disease (multiple); non-alcoholic fatty liver disease; primary open angle glaucoma; and type 2 diabetes mellitus. Orthologous to human ADIPOQ (adiponectin, C1Q and collagen domain containing).

Ensembl:

ensembl_id ENSDARG00000100086

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031784 False 1118 mRNA 0.48 3 4490604 4496358
TCONS_00031785 True 831 mRNA 0.53 2 4490824 4494239

Neighbor

gene id symbol gene type direction distance location
XLOC_016100 NA coding downstream 371789 4114011 ~ 4118815 (-)
XLOC_016099 yme1l1b coding downstream 419754 4044636 ~ 4070850 (-)
XLOC_016098 rab18b coding downstream 457872 4019538 ~ 4032732 (-)
XLOC_016097 mmp16b coding downstream 812575 3630307 ~ 3678029 (-)
XLOC_016096 pter coding downstream 874241 3603589 ~ 3616363 (-)
XLOC_016102 FO704866.1 coding upstream 74655 4571013 ~ 4571103 (-)
XLOC_016103 CABZ01063651.1 coding upstream 134977 4631335 ~ 4642407 (-)
XLOC_016104 tnk2b coding upstream 232797 4729155 ~ 4797512 (-)
XLOC_016105 CU929154.1 coding upstream 316336 4812694 ~ 4814272 (-)
XLOC_016106 tfr1a coding upstream 352911 4849269 ~ 4874966 (-)
XLOC_016095 NA non-coding downstream 970438 3519583 ~ 3520166 (-)
XLOC_016092 CU633991.2 non-coding downstream 1074397 3412076 ~ 3416207 (-)
XLOC_016090 FO818692.1 non-coding downstream 1364530 3125958 ~ 3126074 (-)
XLOC_016082 NA non-coding downstream 1996304 2485435 ~ 2494300 (-)
XLOC_016113 NA non-coding upstream 953423 5449781 ~ 5453522 (-)
XLOC_016118 NA non-coding upstream 1204740 5701098 ~ 5702648 (-)
XLOC_016123 NA non-coding upstream 1342538 5838896 ~ 5840494 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000003_01126525_01129929 ADIPOQB coding CI01000003 null 1126098 ~ 1130325 (+)