XLOC_016109 (phb2a)


Basic Information

Item Value
gene id XLOC_016109
gene name phb2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5178172 ~ 5199431 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031803
ACAACCACGTGGTCGGACTGTCACAAGTGACGTCCAGTCGGTAGAAGGACAGCATGGCGAGCAAAGATCCCGGAAATTTTTTGCAGCAGCTCAGGCAGATTGCCAGCAGAATGGGCTCTGGTCCTCGAGGCGCTGGTTTGGGTGTGAAGCTGCTCATTGGAGCTGGAGCCCTCGCCTATGGGGTCAAAGAAGCCACATATACAGTGGAGGGTGGTCAGAGAGCCGTTATCTTCAGCAGAATCGGAGGGATGCAGATGGACACTGTACTTGCAGAAGGATTGCACTTCAGGATGCCGTGGTTCCAGTATCCTATTATCTATGATATCCGAGCCAGGCCCAGGAAGATTTCCTCTCTCACTGGAAGCAAAGATCTTCAGATGGTAAACATTGGTCTACGTGTGTTGTCTCGCCCGGTTGCCTCCCAATTGCCAATCATGTACCAGCAGCTGGGGAAGGACTACGATGAGCGTGTGCTTCCTTCCATCGTCAACGAAGTGCTCAAGAGCGTCGTGGCCAAGTTTAACGCCTCCCAGCTGATCACACAGAGAGCTCAGGTGTCACTGCTCATAAGGCGAGATCTGATCGAGAGGGCTAAAGACTTTAACATCATCCTGGATGACGTGGCTATCACTGAGCTCAGCTTCAGCAAAGAATACACAGCTGCTGTGGAGGCCAAACAAGTCGCCCAGCAGGAGGCGCAGAGGGCTCAGTTCTTCGTAGAGAAGGCCAAGCAGGACCAGAGACAGAAGATTATCCAGGCTGAAGGTGAAGCTGAGGCTGCTAAAATGTTGGGTCAAGCTGTTACGAAGAACCCGGGTTACCTGAAACTCAGACGCATCAGAGCAGCACAAAATATTGCCAAAACGGTGGCAGCTTCTCAGAACAAGGTGTACCTAAGTGCAGACAGCCTGGTTCTGAACCTCCAGGACAGCTCCTTTAACAACCTGTCACTGGGGAAATGAGAAGAGCATCATCCATGAAGAACATATGCATTCCATATGTAAGCAGTGTTTGCTGAGCCACTATGTTTATGCCCTCTTCTTCAACAGACTGTGAGCAGAGTCTCTACTCAGTGCAGTTTTCTGCTGGGGGCTCAGATCAGACACGGGCCGGGCAGCCTTACAGATTCACATCATATACATGTACATGCACTTGTTTGTCATTCAGCAGCTCTTTCAAACTCAATTTCGGTAAATCCAGCTTCAGAACAAGTGGGTTAACTAATAGTgcttgcaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

symbol description
phb2a Predicted to be involved in mitochondrion organization. Predicted to be located in mitochondrial inner membrane and plasma membrane. Predicted to be active in mitochondrion. Orthologous to human PHB2 (prohibitin 2).

GO:

id name namespace
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3141 Predicted to be involved in mitochondrion organization. Predicted to be located in mitochondrial inner membrane and plasma membrane. Predicted to be active in mitochondrion. Orthologous to human PHB2 (prohibitin 2).

Ensembl:

ensembl_id ENSDARG00000045297

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031803 True 1332 mRNA 0.47 10 5178172 5199431

Neighbor

gene id symbol gene type direction distance location
XLOC_016108 ptmab coding downstream 43047 5131964 ~ 5135125 (-)
XLOC_016107 dlg1l coding downstream 103360 4900213 ~ 5074812 (-)
XLOC_016106 tfr1a coding downstream 303206 4849269 ~ 4874966 (-)
XLOC_016105 CU929154.1 coding downstream 363900 4812694 ~ 4814272 (-)
XLOC_016104 tnk2b coding downstream 380660 4729155 ~ 4797512 (-)
XLOC_016110 MFN1 coding upstream 139328 5338759 ~ 5356686 (-)
XLOC_016111 si:ch1073-184j22.2 coding upstream 197633 5397064 ~ 5404466 (-)
XLOC_016112 wdr33 coding upstream 211001 5410432 ~ 5443745 (-)
XLOC_016113 NA coding upstream 250350 5449781 ~ 5453522 (-)
XLOC_016114 proca coding upstream 257110 5456541 ~ 5475921 (-)
XLOC_016102 FO704866.1 non-coding downstream 607069 4571013 ~ 4571103 (-)
XLOC_016100 NA non-coding downstream 1059357 4114011 ~ 4118815 (-)
XLOC_016095 NA non-coding downstream 1658006 3519583 ~ 3520166 (-)
XLOC_016092 CU633991.2 non-coding downstream 1761965 3412076 ~ 3416207 (-)
XLOC_016118 NA non-coding upstream 501667 5701098 ~ 5702648 (-)
XLOC_016123 NA non-coding upstream 639465 5838896 ~ 5840494 (-)
XLOC_016138 CABZ01077605.1 non-coding upstream 1566862 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 non-coding upstream 1676320 6875751 ~ 6919316 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000003_00538178_00547944 PHB2, PHB2A, PHB2B coding CI01000003 null 538085 ~ 547983 (+)