XLOC_016111 (si:ch1073-184j22.2)


Basic Information

Item Value
gene id XLOC_016111
gene name si:ch1073-184j22.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5397064 ~ 5404466 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031805
AAAAGAGCAGATCACACCGAGGGACCAGGTCAGTGACTGAAAATATAACACTGgacataataaatCGTAATGTCAATATCACAGATAACCCCGACCCTCTTCCTAAGTGGCGCCGATGCGTCAATGAATCAAGCCCTTATGACCCGAAAAGGCATTACACTCATCGTGAACGTGACCCTGTCCCACACCTGCCCTGTCTACCCAGGCGTGGAGTGTATACGTGTGGCAGTGTCCGACCTTCCAAATGCTCGTCTGGGGGACCACTTTGACCACGTCTCCGCTCGAATTCACAACAACAGACCTGGAGGAACCCTAGTGCactgtgctgcaggaatgagccGCTCTCCTGCTGTTATAATGGCATATCTCATGAAGTACAAAGGAGTGACTCTGAGACAGGCGCACAAGTGGGTTAAAGACAGCAGACCATACATTCGCCTTAATGTAGGATTCTGGACCCAGCTTCTGGATTACGAGAGGAAACTCTACGGTAGGAATACTGTGAGAGTGGCTGAACCCGTGGATGCACAGCCAACGCCACAAACACCAAAACTACCCTCCAGGTATAAAATGAGACAGTGTCCTCCGTCTCCAAGAGCGAGCCAACTCAGAAGATTCACCTCCTTTTCATCCTAACCAATGTTTGCAAACTGAGGTCAtgaaatatgttgcatgtacatggATAACTTCTTTCTACGCCATCACTTTGGATTGGAATCAGTAAGACTTATGAAGTGAAACGAACCAAATAGGCACGTTTTGTTTTACCCCTAGCTtttatcttgtgtgtgtgtgtgtgtgtgtatgtttattaatgtaattcTCTTCGTTGGGTGGATAAAACGATGATAATTCATTTCATATTCTGATAACAATatccactcactggccactttattaggtacaccttattagtaccggtttgaacccccttttgccttcagaactgccttaatcctttgtggcatagattcaacagggtgctggaaatattcctcagagattttggtccatattgtcatgataatatcacgcagttgctgcagatttgtcggctgcacatccatgatgttaaTCTCCAGTtcgaccacatcccaaagatgctctgtTTGATTGAGACCTggtcactgtggaggccatttgagtacagtgaagttattgtcatgttcaaaaaaccagtctgagatgatttgcgctagGAAGTAGCCGTCAGGAGATGGGTACACtatagtcataaagggatggacatggtcagcaactattcttaggtaggctgtggcgttgcaacaatactcaattggtactaatgggcccaaacaGTGCCAAgactattacaccaccagcctgaaacatTAATAcatggcaggatggatccatgctttcatgttgttgagttcaaattctgaccctaccatccaaatgttgcagcagaaatcgagactcatcagaccaggcaaagtttttccaatcttctattgtccaattttggtgagcctgtgcgaattgtagcctcagtttccaggagtggtacccggtgtggtcttctgctgctgtagctcatccaccTCAAGGCTCatcatgttgtgcgttcagagaagctcatcaagtggttatttgagttactcgaaccagtctggccattctcttctgacatcaacaaggcatttgcgcccacagaactgccgctcactggatattttctgtttttcggaccattccctgtaaaccctatagaaggttgtgcgtgaaaatcccagtaggtcagcagtttctgaaatactcagaccagcccgtctggcaccaacaaccatgccacgttcaaagtcacttaaatcacctttcttacccattctgatgctcggtgtttatcagtgtacctaataaagtggccgcaaCTTTTCTGTCAATTCAATCAATTAATAGCTTACAAACATTGACCACATGAAAAGGACCATTTCTctcttttatttacattataaagtATATACTCAAAAA
>TCONS_00031806
ggtggttgagtcggccgatccggcggcttttcgcgcgagaacggcgcgggcacgaacggcgcgcgctcccgagaggcgcccgagacgcgaaaaagcgcgcacagcggcctcttgcggatccgTGAAagcaaaaaacgctcgaatacgtacctcccgggacgtaaatcgcggtccgcagaaatgtccgcggggctacgtttccacaatgagcccgggttgaatgtATCATTtgcacaatgcaactttaaaatacagtaacatacggcattactgtcctacagtaaaatacagttcatgttACAGTTAAATAATTTCGTAAACAGTGTGCAATTACATATTAACACAGCATAGCAGCACAAATTTGGTATAGTAATGGAGTACAGCCTAGTTCAAGTTTATTCAGTTAAAAATGTAACCTTATTTCTATCCTATGTCTGTTTCCAGCGTAATGTCAATATCACAGATAACCCCGACCCTCTTCCTAAGTGGCGCCGATGCGTCAATGAATCAAGCCCTTATGACCCGAAAAGGCATTACACTCATCGTGAACGTGACCCTGTCCCACACCTGCCCTGTCTACCCAGGCGTGGAGTGTATACGTGTGGCAGTGTCCGACCTTCCAAATGCTCGTCTGGGGGACCACTTTGACCACGTCTCCGCTCGAATTCACAACAACAGACCTGGAGGAACCCTAGTGCactgtgctgcaggaatgagccGCTCTCCTGCTGTTATAATGGCATATCTCATGAAGTACAAAGGAGTGACTCTGAGACAGGCGCACAAGTGGGTTAAAGACAGCAGACCATACATTCGCCTTAATGTAGGATTCTGGACCCAGCTTCTGGATTACGAGAGGAAACTCTACGGTAGGAATACTGTGAGAGTGGCTGAACCCGTGGATGCACAGCCAACGCCACAAACACCAAAACTACCCTCCAGGTATAAAATGAGACAGTGTCCTCCGTCTCCAAGAGCGAGCCAACTCAGAAGATTCACCTCCTTTTCATCCTAACCAATGTTTGCAAACTGAGGTCAtgaaatatgttgcatgtacatggATAACTTCTTTCTACGCCATCACTTTGGATTGGAATCAGTAAGACTTATGAAGTGAAACGAACCAAATAGGCACGTTTTGTTTTACCCCTAGCTtttatcttgtgtgtgtgtgtgtgtgtgtatgtttattaatgtaattcTCTTCGTTGGGTGGATAAAACGATGATAATTCATTTCATATTCTGATAACAATatccactcactggccactttattaggtacaccttattagtaccggtttgaacccccttttgccttcagaactgccttaatcctttgtggcatagattcaacagggtgctggaaatattcctcagagattttggtccatattgtcatgataatatcacgcagttgctgcagatttgtcggctgcacatccatgatgttaaTCTCCAGTtcgaccacatcccaaagatgctctgtTTGATTGAGACCTggtcactgtggaggccatttgagtacagtgaagttattgtcatgttcaaaaaaccagtctgagatgatttgcgctagGAAGTAGCCGTCAGGAGATGGGTACACtatagtcataaagggatggacatggtcagcaactattcttaggtaggctgtggcgttgcaacaatactcaattggtactaatgggcccaaacaGTGCCAAgactattacaccaccagcctgaaacatTAATAcatggcaggatggatccatgctttcatgttgttgagttcaaattctgaccctaccatccaaatgttgcagcagaaatcgagactcatcagaccaggcaaagtttttccaatcttctattgtccaattttggtgagcctgtgcgaattgtagcctcagtttccaggagtggtacccggtgtggtcttctgctgctgtagctcatccaccTCAAGGCTCatcatgttgtgcgttcagagaagctcatcaagtggttatttgagttactcgaaccagtctggccattctcttctgacatcaacaaggcatttgcgcccacagaactgccgctcactggatattttctgtttttcggaccattccctgtaaaccctatagaaggttgtgcgtgaaaatcccagtaggtcagcagtttctgaaatactcagaccagcccgtctggcaccaacaaccatgccacgttcaaagtcacttaaatcacctttcttacccattctgatgctcggtgtttatcagtgtacctaataaagtggccgcaaCTTTTCTGTCAATTCAATCAATTAATAGCTTACAAACATTGACCACATGAAAAGGA

Function

symbol description
si:ch1073-184j22.2 Predicted to enable MAP kinase tyrosine/serine/threonine phosphatase activity and protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Is expressed in several structures, including forerunner cell group; lens placode; nervous system; optic vesicle; and paraxial mesoderm.

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-32 Predicted to enable MAP kinase tyrosine/serine/threonine phosphatase activity and protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Is expressed in several structures, including forerunner cell group; lens placode; nervous system; optic vesicle; and paraxial mesoderm.

Ensembl:

ensembl_id ENSDARG00000078598

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031805 False 1995 mRNA 0.44 2 5397064 5404466
TCONS_00031806 True 2330 mRNA 0.46 1 5397108 5399437

Neighbor

gene id symbol gene type direction distance location
XLOC_016110 MFN1 coding downstream 40378 5338759 ~ 5356686 (-)
XLOC_016109 phb2a coding downstream 197633 5178172 ~ 5199431 (-)
XLOC_016108 ptmab coding downstream 261939 5131964 ~ 5135125 (-)
XLOC_016107 dlg1l coding downstream 322252 4900213 ~ 5074812 (-)
XLOC_016106 tfr1a coding downstream 522098 4849269 ~ 4874966 (-)
XLOC_016112 wdr33 coding upstream 5966 5410432 ~ 5443745 (-)
XLOC_016113 NA coding upstream 45315 5449781 ~ 5453522 (-)
XLOC_016114 proca coding upstream 52075 5456541 ~ 5475921 (-)
XLOC_016115 saga coding upstream 75659 5480125 ~ 5505094 (-)
XLOC_016116 cldn15la coding upstream 104076 5508542 ~ 5517438 (-)
XLOC_016105 CU929154.1 non-coding downstream 582792 4812694 ~ 4814272 (-)
XLOC_016102 FO704866.1 non-coding downstream 825961 4571013 ~ 4571103 (-)
XLOC_016100 NA non-coding downstream 1278249 4114011 ~ 4118815 (-)
XLOC_016095 NA non-coding downstream 1876898 3519583 ~ 3520166 (-)
XLOC_016092 CU633991.2 non-coding downstream 1980857 3412076 ~ 3416207 (-)
XLOC_016118 NA non-coding upstream 296632 5701098 ~ 5702648 (-)
XLOC_016123 NA non-coding upstream 434430 5838896 ~ 5840494 (-)
XLOC_016138 CABZ01077605.1 non-coding upstream 1361827 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 non-coding upstream 1471285 6875751 ~ 6919316 (-)

Expression


Co-expression Network