XLOC_016113


Basic Information

Item Value
gene id XLOC_016113
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5449781 ~ 5453522 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033763
TTGTTATTTGATGTCTTTATTGGGCATAACCCAAAAGAATAATAAACTCAACACAACTTAAACGGGTAACTCTTTACAATACAGAACATGTAGTTAATAATGCTAGTAAACAAAGGAAGATCTTCGTGAatgtttagtttaaacagtttctAACCTGACACCATCAGCACACAGCAAAGCATACAATCATCCCAGAAAACAGCATGCCTATTAGTGCCCTCCATACCTGAGGATGGATACAACACAATTCATATCTAAAACAAcatcatatacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtaaacatttatattgcatagaaaaaatgttgaaaataaagacaaaaaaataaatgttcttaAGGATTTTCTTGGGTTGCGCTTGTCTAAAAAGTACTgacaattttataaaatatttaatgaacatatgAAATCATTATATTAACTGTTTAAATGACGCATTACACCATCATCCTATCAACATAAGACACAACAAGCTTACAGTGACAAGCAATTGGGCTGTCTGCACCAAACGCAATGCTACGGAGCCCCTTAAGTGACATGTGGAAGAAATACTACTGATGAAGACTTTCACATTTGCACGACATCGACATATATATCACATGTGCACAACATATATATCCAGTGTGAACAACATAGACATACATATCGCATGTATATGACATAAACATACATATCGAGTGTGCACAACATACGTATCGCATGTGAACGACATATGTGACATAGATCTgcatgacatacagttgaagacagaattaattatttttatatatattttcccaaatgatgtttaacaaagcaaagaaatgatcacagtatgtctgataatattttttcttctggagaaagtcttacttgttttatttcggctagaataaaagcagttttacattttttttataaacattttaaggacaaaattatttgctcctttaagatattttttctttgatagtctacagaacaaaccatcattacacattaacttgtctaattaccctaatctgcctagttaacctaattaacctagttaagtctttaaatttcactttaagctgtatagaagtgtcttgaaaaacatctagtcaaatattatttactgtcatcatcgcaaagataaaataaatcagttactagaaaagtttttaaaactattatgtttagaaatgtgttgaaaccaTCTTCTCTCCACTaaacaaaaattgaaaaaaaaaaaaaaaaacaggggggctaataattctgacttatataaGTATAGTTTACACACAACGTAGACATATATATCGTGTGGGCACGACATACGTATAGCGTGCGTACAAcatagacATATATATCGCGTGCACGATATACACACAGCGTGCGCACAACATAGACATATATATCACATGTGCACTACATACGTATAGCATGCGCACaacatagacatatatatatatatatatatatatatatatatatatcacgtGTGCACGATATACACACAGCGTGCGCACAACATAGACATATATATCACATGTGCACTACAAACGTATAGCATGCGCACaacatagacatatatatatatatatcgcgtGTGCACGACATACGTATAGCATGCGCACaacatagacatatatatatatatatcgcgtGTGCACGACATGCATATAGCGTGCGCACAACATAGACATATATGTCGCGTGTGCACGACATACGCATTGCATCCGCATGACATAGACATATACTGTGTGTGCACCACATACGGATTGCTTCATATGACATAGACATACCTATTGTGTGCATATGACATGGACATACATATTGCGTGTGCACGACATCACGTGAGCACGCTAACGTCTTCAATATTTTTTCCCCACATGTCACTTTAGGAACTCCTTATGATGCGacacaacagaaacatttaaatacagacaTTGTGTGCACATTGTGAGTCACTTTCTGAATTTTGTTTTCGAACCGTTTATTTTCAATATCTGAGGTGTGTCTGCTGCCGTTTTCAGACGTATGGACATAAATGTCACTTATAAtggtattcaaactcacattggtagcatttaacactggaTAAAGCATATAgtctgtacctgaggtgatcattggcATAGTAGTTTATGCCATTGTTTTGCTGTGACTTTGTGGAAATAGAAACTAAAATGGTCATTTCTCTTTATCCTGTGTGTAGTTAGGACTTGGTGTTATTCTATTCTGTgaaaatatttttgcagttttgaggTTCTCTAGGTTTGTTAAAGGGACTCGTCTCCATCAGAAAAACTGCAGTCTATTTAGCAGAAAACAACATAATTAAGgtaaaaaagcactttaaaaagCCATTTAAGTTTTCAAAAATGGCAATAAATACAACAACTTGAGGATGACAATATAAGGCACGTATCCTAATTTAAAGGAATTCATACTCATAGCTGCATCTAAGCTCTTAATTTTCATCAAGCATTATATTAACAGGTCTAGCCATA

Function

GO:

id name namespace
GO:0022610 biological adhesion biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0009888 tissue development biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0071711 basement membrane organization biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0007155 cell adhesion biological_process
GO:0016049 cell growth biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005604 basement membrane cellular_component
GO:0031430 M band cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033763 True 2539 lncRNA 0.33 4 5449781 5453522

Neighbor

gene id symbol gene type direction distance location
XLOC_016112 wdr33 coding downstream 6036 5410432 ~ 5443745 (-)
XLOC_016111 si:ch1073-184j22.2 coding downstream 45315 5397064 ~ 5404466 (-)
XLOC_016110 MFN1 coding downstream 93095 5338759 ~ 5356686 (-)
XLOC_016109 phb2a coding downstream 250350 5178172 ~ 5199431 (-)
XLOC_016108 ptmab coding downstream 314656 5131964 ~ 5135125 (-)
XLOC_016114 proca coding upstream 3019 5456541 ~ 5475921 (-)
XLOC_016115 saga coding upstream 26603 5480125 ~ 5505094 (-)
XLOC_016116 cldn15la coding upstream 55020 5508542 ~ 5517438 (-)
XLOC_016117 parla coding upstream 90379 5543901 ~ 5561019 (-)
XLOC_016118 NA coding upstream 247576 5701098 ~ 5702648 (-)
XLOC_016105 CU929154.1 non-coding downstream 635509 4812694 ~ 4814272 (-)
XLOC_016102 FO704866.1 non-coding downstream 878678 4571013 ~ 4571103 (-)
XLOC_016100 NA non-coding downstream 1330966 4114011 ~ 4118815 (-)
XLOC_016095 NA non-coding downstream 1929615 3519583 ~ 3520166 (-)
XLOC_016092 CU633991.2 non-coding downstream 2033574 3412076 ~ 3416207 (-)
XLOC_016123 NA non-coding upstream 385374 5838896 ~ 5840494 (-)
XLOC_016138 CABZ01077605.1 non-coding upstream 1312771 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 non-coding upstream 1422229 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 non-coding upstream 1455140 6908662 ~ 6908681 (-)

Expression


Co-expression Network